View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4915_low_2 (Length: 388)
Name: NF4915_low_2
Description: NF4915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4915_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 8 - 367
Target Start/End: Complemental strand, 1684393 - 1684038
Alignment:
| Q |
8 |
tggacatcatctgctctgctccatccctttgacctttatgttctggtaatttatattcctatagtattgttgtgacttgtgagttaataattggatgaat |
107 |
Q |
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| T |
1684393 |
tggacaacatatgctctgctccatccctttgacctttatgttctggtaatttatattcctatagtattgttgtgacttgtgagttaataattggatgaat |
1684294 |
T |
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| Q |
108 |
gatttatacttaacccatattaattaattaatgtacattttcactgactactacagatcagcaatggtattggagtaatctctggaactgttcagctcat |
207 |
Q |
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| T |
1684293 |
gatttatacttaacccatattaattaata----tacactttcactgactactgcagatcagcaatggtattggagtaatctctggaactgttcagctcat |
1684198 |
T |
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| Q |
208 |
actatatggctattactggtgcaggggagataatcagatagatgatgataagggtggtccatctccagttgcgactgcagtctgatctgattatggcact |
307 |
Q |
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| T |
1684197 |
actatatggctattactggtgcaggggagataatcagattgatgatgataagggtggtccagctccagttgtgactgcagtctgatctgattatggcact |
1684098 |
T |
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| Q |
308 |
tcnnnnnnncaattttcaaattaggatgacattacaaattttattagaggttttatctag |
367 |
Q |
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| T |
1684097 |
tctttttttcaattttcaaattaggatgacattacaaattttattagaggttttatctag |
1684038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 8 - 367
Target Start/End: Complemental strand, 1694828 - 1694463
Alignment:
| Q |
8 |
tggacatcatctgctctgctccatccctttgacctttatgttctggtaatttatattcctatagtattgttgtgacttgtgagttaataattggatg--- |
104 |
Q |
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| T |
1694828 |
tggacaacatatgctctgctccacccctttgacatttatgttctggtaatttatattcctatagtattgttgtgatttgtgagttaataattgtatgtaa |
1694729 |
T |
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| Q |
105 |
------------aatgatttatacttaacccatattaattaattaatgtacattttcactgactactacagatcagcaatggtattggagtaatctctgg |
192 |
Q |
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| T |
1694728 |
ttcaattggattaaagatttatacttaacccatgtt-----attaatatacatttttactgattattgcagatcagtaatggtattggagtaatctctgg |
1694634 |
T |
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| Q |
193 |
aactgttcagctcatactatatggctattactggtgcaggggagataatcagatagatgatgataagggtggtccatctccagttgcgactgcagtctga |
292 |
Q |
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| T |
1694633 |
aactattcagctcatactatatggctattactggtgcaggggagataatcagattggtgatgataagaatgat---gctccagctgtgactgtagtctga |
1694537 |
T |
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| Q |
293 |
tctgattatggcacttcnnnnnnncaattttcaaattaggatgacattacaaattttattagaggttttatctag |
367 |
Q |
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| T |
1694536 |
tctgattatggcacttc-ttttttcttttttcaaattagcatgacattacaaattttattagaggatttatctag |
1694463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 256
Target Start/End: Complemental strand, 1970616 - 1970554
Alignment:
| Q |
194 |
actgttcagctcatactatatggctattactggtgcaggggagataatcagatagatgatgat |
256 |
Q |
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| T |
1970616 |
actgttcagctcatattatatgcttattactcgtgcaagggagaaaatcagattgatgatgat |
1970554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 1699335 - 1699287
Alignment:
| Q |
167 |
agcaatggtattggagtaatctctggaactgttcagctcatactatatg |
215 |
Q |
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| T |
1699335 |
agcaatggtattggagtggtttctggaattgttcagctcatactatatg |
1699287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 254
Target Start/End: Complemental strand, 1674033 - 1673944
Alignment:
| Q |
165 |
tcagcaatggtattggagtaatctctggaactgttcagctcatactatatggctattactggtgcaggggagataatcagatagatgatg |
254 |
Q |
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| T |
1674033 |
tcagcaatggtattggagcaatctcaggttttgttcagctcatattatatgtttatttttggtgcaagggagaaaataagaatgatgatg |
1673944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 352
Target Start/End: Complemental strand, 1694450 - 1694422
Alignment:
| Q |
324 |
caaattaggatgacattacaaattttatt |
352 |
Q |
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| T |
1694450 |
caaattaggatgacattacaaattttatt |
1694422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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