View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4915_low_3 (Length: 385)
Name: NF4915_low_3
Description: NF4915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4915_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 181 - 370
Target Start/End: Complemental strand, 41842606 - 41842417
Alignment:
| Q |
181 |
ctactataagagtgtagcaagtagaaaaagaaacacacctcatctctaaaagcctcaacatgatgcttccctaaatccttcttgagggccttcaagattt |
280 |
Q |
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| T |
41842606 |
ctactataagagtgtagcaagtagaataagaaacacacctcatctctaaaagcctcaacatgatgcttccctaaatccttcttgagggccttcaagattt |
41842507 |
T |
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| Q |
281 |
cttcctcattttctttgacaaagttacgcaacccttttagttgtgattctctccatgatgtttcttttgtttttccactcccataatatt |
370 |
Q |
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| T |
41842506 |
cttcctcattttctttgacaaagttacgcaacccttttagttgtgattctctccatgatgtttcttttgtttttccactcccataatatt |
41842417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 41842761 - 41842669
Alignment:
| Q |
18 |
gtacatatataaactaacctctttaccagccatccattttttgaaggactttattgccaaatcaatggannnnnnnaacgttccaacctgcaa |
110 |
Q |
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| T |
41842761 |
gtacatatataaactaacctctttaccagccatccattttttgaaggactttattgccaaatcaatggatttttttaacgttccaacctgcaa |
41842669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 306 - 370
Target Start/End: Complemental strand, 24396549 - 24396485
Alignment:
| Q |
306 |
acgcaacccttttagttgtgattctctccatgatgtttcttttgtttttccactcccataatatt |
370 |
Q |
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| T |
24396549 |
acgcaacccttttagttgtgattctctccaagatgcttcctttgttataccactcctaaaatatt |
24396485 |
T |
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