View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4916-Insertion-1 (Length: 823)
Name: NF4916-Insertion-1
Description: NF4916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4916-Insertion-1 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 411 - 823
Target Start/End: Original strand, 25742870 - 25743277
Alignment:
| Q |
411 |
catgtaaatcagataattctcctagttcatcaatggaagatccatattcttttcctatgaaaaagtcacttagtttttgtaggtttgtcaatgcacataa |
510 |
Q |
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| T |
25742870 |
catgtaaatcagataattctcctatttcatcaatggaagatccatattcttttcctatgaaaaagtcacttagtttttgtaggtttgtcaatgcacataa |
25742969 |
T |
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| Q |
511 |
atgcaatggcatccatttcaaactcgtacaagtaatatctaagtaacgcaggttaactaacctatgaaaatctttaggaagttcttgtaggttagtacat |
610 |
Q |
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| T |
25742970 |
atgcaatggcatccatttcaaactcgtacaagtaatatctaagtaacgcaggttaactaacctatgaaaatctttagga-----ttgtaggttagtacat |
25743064 |
T |
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| Q |
611 |
ccaactagtttcaaagtttccaaattgtacagacaaccaatgctttcccgcaatatgttcatcttagctccagacagatctagataccgaagatgtatta |
710 |
Q |
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| T |
25743065 |
ccaactagcttcaaagtttccaaattgtacagacaaccgatgctttcccgcaatatgttcatcttagccccagacagatctagataccgaagatgtatta |
25743164 |
T |
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| Q |
711 |
gttcggtaactgaatcaggcaaccccttatgatagatgccttccaaagataacacccttaaacacttgagcttgatcaacaagtcatgtgggatctcatc |
810 |
Q |
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| T |
25743165 |
gttcggtaactgaatcaggcaaccccttatgatagatgccttccaaagataacacccttaatgacttgagcttgatcaacaagtcatgtggaatctcatc |
25743264 |
T |
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| Q |
811 |
aataaagctcaca |
823 |
Q |
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| T |
25743265 |
aataaagctcaca |
25743277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 128 - 388
Target Start/End: Original strand, 25742613 - 25742871
Alignment:
| Q |
128 |
caatatttgctaccctggagctccatgaacaacaagttgtagaaggaagagtctccgacccaactaggaaattccgtccctaggtagttatgtatagaaa |
227 |
Q |
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| T |
25742613 |
caatatttgctaccctggagctccatgaacaacaagttgtagaaggaagagtctccgacccaattaggaaattctgtccctaggtagttatgtatagaaa |
25742712 |
T |
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| Q |
228 |
gctctttaatatttgtatggggctgtaacctgtctagtatgtctttttcttgttgtgaattgtcagtatcagcattctcactccattccaaaagtaactt |
327 |
Q |
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| T |
25742713 |
gctct--aagatttgtatggggctgtaacctgtctagtatgtctttttcttgttgtgaattgtcagtatcagcattctcaccccattccaaaattaactt |
25742810 |
T |
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| Q |
328 |
ttcaagaagttccttttcattcaacttggccttttctgaatccacatagctaaaatgttca |
388 |
Q |
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| T |
25742811 |
ttcaagaagttccttttcattcaacttggccttttctgaatccacatagctaacatgttca |
25742871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 533
Target Start/End: Complemental strand, 18086660 - 18086522
Alignment:
| Q |
395 |
tgaatgaacagtgatccatgtaaatcagataattctcctagttcatcaatggaagatccatattcttttcctatgaaaaagtcacttagtttttgtaggt |
494 |
Q |
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|||||||||| |||||||||||||| | ||| ||||| |||||| |||||||||||||| |||| || | ||||||||||| | ||||| |||| |
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| T |
18086660 |
tgaatgaacaatgatccatgtaaattacatagctctcccagttcactaatggaagatccatgatcttcaccaacaaaaaagtcactcaacttttgaaggt |
18086561 |
T |
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| Q |
495 |
ttgtcaatgcacataaatgcaatggcatccatttcaaac |
533 |
Q |
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| T |
18086560 |
ttttcaattcactgatttgcaatggcatccacttcaaac |
18086522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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