View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4916-Insertion-2 (Length: 794)
Name: NF4916-Insertion-2
Description: NF4916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4916-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 8 - 465
Target Start/End: Original strand, 45728643 - 45729107
Alignment:
| Q |
8 |
gatgttgcttgcttgagccttgagcttcactaaacgactggataacagacggccatttccttcaaccat-caatatgggaatccacccacattatccaca |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45728643 |
gatgttgcttgcttgagccttgagcttcactaaacgactggataacagacggccatttccttcaaccattcaatatgggaatccacccacattatccaca |
45728742 |
T |
|
| Q |
107 |
cggaactccaattatttctactgatcaaagtcgaagcaagcatattttcttttt-ggttacaatgcgaaaaggaagcaagcatatttgaaatttcggatt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
45728743 |
cggaactccaattatttctactgatcaaagtcgaagcaagcatttttttttttttggttacaatgcaaaaaggaagcaagcatatttgaaatttcagatt |
45728842 |
T |
|
| Q |
206 |
cttata--tttgattgcattaactgtattccttattacaaattgtttaaactttcagatgaaacttcattatcatattagtataattatcctaagaaaca |
303 |
Q |
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|||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45728843 |
cttatatatttgattgcatcaactgtattccttattacaaattgtttaaaatttcagatgaaacttcattatcatattagtataattatcctaagaaaca |
45728942 |
T |
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| Q |
304 |
caagcattgtatatgctagctcaacgtcattgcaggttaatatctccatttctccatggaaaacgaatatggcgaatataaata--nnnnnnnatatata |
401 |
Q |
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| T |
45728943 |
caagcattgtatatgctagctcaacgtcattgcag--taatatctccatttctccatggaaaacgaatatggcgaatataaatatttttttttatatata |
45729040 |
T |
|
| Q |
402 |
tagcccctacatatctgagcattaagtttcattat---taagcaattacacaaatcaaagtagtgac |
465 |
Q |
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| T |
45729041 |
tagcccctacatatctgagcattaagtttcattattaataagcaattacacaaatcaaagtagtgac |
45729107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 531 - 794
Target Start/End: Original strand, 45729173 - 45729436
Alignment:
| Q |
531 |
tgaagagattccttctcgtagtaaattgtctcatattatccctaggtacctgcagtgctcccctcataatgcgtctctatttcatccacggcggccaacg |
630 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45729173 |
tgaagagattccttctcgtagtaaattgtctcatattatccctaggtacctgcagtgctcccctcataatgcgtctctatttcatccacggcggccaacg |
45729272 |
T |
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| Q |
631 |
tgtctggctctccgccttcctccaaaccgccggtttccccttgatgctcattcccctcgcaatctcatacatcaaacgccaccgtctccacccccatcct |
730 |
Q |
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| T |
45729273 |
tgtctggctctccgccttcctccaaaccgccggtttccccttgatgctcattcccctcgcaatctcatacatcaaacgccaccgtctccaccaccatcct |
45729372 |
T |
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| Q |
731 |
ccaccatcgacaaccatctccatcgccccagaaaaactaaatataatctccatgaaacctccta |
794 |
Q |
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| T |
45729373 |
ccaccattgacaaccatctccatcgccccagaaaaactaaatataatctccatgaaacctccta |
45729436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 538 - 794
Target Start/End: Original strand, 45724991 - 45725247
Alignment:
| Q |
538 |
attccttctcgtagtaaattgtctcatattatccctaggtacctgcagtgctcccctcataatgcgtctctatttcatccacggcggccaacgtgtctgg |
637 |
Q |
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||||||||| ||||||||||||| |||||| ||||||||| || | ||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45724991 |
attccttctgatagtaaattgtctgatattagccctaggtaactccggtggtcccctaataatgcgtctctatttcatccacggcggccaacgtgtctgg |
45725090 |
T |
|
| Q |
638 |
ctctccgccttcctccaaaccgccggtttccccttgatgctcattcccctcgcaatctcatacatcaaacgccaccgtctccacccccatcctccaccat |
737 |
Q |
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|||||||||| ||| |||| |||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| || || | | ||| ||||| |
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| T |
45725091 |
ctctccgcctgcctggaaactgccggtttccccttgatgctcattcccctcacaatctcatacatccaacgtttccgtcaccgccacaaacctttaccat |
45725190 |
T |
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| Q |
738 |
cgacaaccatctccatcgccccagaaaaactaaatataatctccatgaaacctccta |
794 |
Q |
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| | ||||||||||||||| ||||||||| ||||||||||||||||||||| |||| |
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| T |
45725191 |
ccaacaccatctccatcgcctcagaaaaacaaaatataatctccatgaaaccaccta |
45725247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 411 - 465
Target Start/End: Original strand, 45724870 - 45724924
Alignment:
| Q |
411 |
catatctgagcattaagtttcattattaagcaattacacaaatcaaagtagtgac |
465 |
Q |
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| T |
45724870 |
catatgtgagcattaagtttcattattaagcaatcacacaaaccaaagtagtgac |
45724924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 45735044 - 45735108
Alignment:
| Q |
182 |
caagcatatttgaaatttcggattcttatatttgattgcattaactgtattccttattacaaatt |
246 |
Q |
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| T |
45735044 |
caagcatatttaaaattttagattcttatatttgattgtattagctgtatttcttattacaaatt |
45735108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 45734979 - 45735028
Alignment:
| Q |
37 |
ctaaacgactggataacagacggccatttccttcaacca-tcaatatggg |
85 |
Q |
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||||| |||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
45734979 |
ctaaatgactggataacagacggccatttccttccaccattcaatatggg |
45735028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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