View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4916-Insertion-3 (Length: 793)
Name: NF4916-Insertion-3
Description: NF4916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4916-Insertion-3 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 393 - 793
Target Start/End: Original strand, 13511410 - 13511811
Alignment:
| Q |
393 |
caataatcacagtcaacaattatttattatttt-agttgtatcaaaagataagagagaatgagagaatcaataaccctggtcggccacgataatctgtcc |
491 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| | |
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| T |
13511410 |
caataatcacagtcaacaattatttattatttttagttgtatcaaaagataagagagaaggagagaatcaataaccctggtcggccacgataatatgttc |
13511509 |
T |
|
| Q |
492 |
aatctaaaggacaaatatttgttgaccaagccaatacctaattcaattaagacaattttaaacgagtaagaagtgggaatccatcacctaatgatgggag |
591 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
13511510 |
aatctaaaggacaaatgtttgttgaccaagtcaatacctaattcaattaagacaatttcaaacgagtaagaagtgggaaaccatcacctaatgatgggag |
13511609 |
T |
|
| Q |
592 |
aagcccaatgatcatgctttcaaaacataagttgttacgactagctgtaatggggggctattgccgtaacaactacaaagctcatgcttgttggattttt |
691 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13511610 |
aagccaaatgatcacgctttcaaaacataagttgttacgactagctgtaatggggggctattgccgtaacaactacaaagctcatgcttgttggattttt |
13511709 |
T |
|
| Q |
692 |
gtttgaacacttgaatgatttgatgtaattgctatttaatatgatgattatgatgtaatacatgaatgtagtagtacttagcctataaatagacatatgt |
791 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13511710 |
gtttgaacacttgaatgatttgatgtaattgctatttaatatgatgcttatgatgtaatacatgaatgtagtagtacttagcctataaatagacatatgt |
13511809 |
T |
|
| Q |
792 |
tc |
793 |
Q |
| |
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|| |
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|
| T |
13511810 |
tc |
13511811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 393 - 793
Target Start/End: Original strand, 13600941 - 13601342
Alignment:
| Q |
393 |
caataatcacagtcaacaattatttattatttt-agttgtatcaaaagataagagagaatgagagaatcaataaccctggtcggccacgataatctgtcc |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| | |
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| T |
13600941 |
caataatcacagtcaacaattatttattatttttagttgtatcaaaagataagagagaaggagagaatcaataaccctggtcggccacgataatatgttc |
13601040 |
T |
|
| Q |
492 |
aatctaaaggacaaatatttgttgaccaagccaatacctaattcaattaagacaattttaaacgagtaagaagtgggaatccatcacctaatgatgggag |
591 |
Q |
| |
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|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
13601041 |
aatctaaaggacaaatgtttgttgaccaagtcaatacctaattcaattaagacaatttcaaacgagtaagaagtgggaaaccatcacctaatgatgggag |
13601140 |
T |
|
| Q |
592 |
aagcccaatgatcatgctttcaaaacataagttgttacgactagctgtaatggggggctattgccgtaacaactacaaagctcatgcttgttggattttt |
691 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13601141 |
aagccaaatgatcacgctttcaaaacataagttgttacgactagctgtaatggggggctattgccgtaacaactacaaagctcatgcttgttggattttt |
13601240 |
T |
|
| Q |
692 |
gtttgaacacttgaatgatttgatgtaattgctatttaatatgatgattatgatgtaatacatgaatgtagtagtacttagcctataaatagacatatgt |
791 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13601241 |
gtttgaacacttgaatgatttgatgtaattgctatttaatatgatgcttatgatgtaatacatgaatgtagtagtacttagcctataaatagacatatgt |
13601340 |
T |
|
| Q |
792 |
tc |
793 |
Q |
| |
|
|| |
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|
| T |
13601341 |
tc |
13601342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 136 - 326
Target Start/End: Original strand, 13511151 - 13511343
Alignment:
| Q |
136 |
actgaattttaataattcaattgatgagaaattctatttacgaacccgaacctttagttctaccgaagacatcaaatgttctaaaaaccaccttgttctg |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13511151 |
actgaattttaataattcaattgatgagaaattctgtttacgaacccgaaccttaagttctaccgaagacatcagatgttctaaaaaccaccttgttctg |
13511250 |
T |
|
| Q |
236 |
taaagc--aaaaaataatattaataacataatttgaaggaaacaccataagagaattgtaaaggaaattggagaataaactgagacgttgact |
326 |
Q |
| |
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|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
13511251 |
taaagcaaaaaaaataaaattaataacataatttgaaggaaacaccataagagaattgtaaaggaaattggggaataaactgagacgttgact |
13511343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 136 - 326
Target Start/End: Original strand, 13600682 - 13600874
Alignment:
| Q |
136 |
actgaattttaataattcaattgatgagaaattctatttacgaacccgaacctttagttctaccgaagacatcaaatgttctaaaaaccaccttgttctg |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
13600682 |
actgaattttaataattcaattgatgagaaattctgtttacgaacccgaaccttaagttctaccgaagacatcagatgttctaaaaaccaccttgttctg |
13600781 |
T |
|
| Q |
236 |
taaagc--aaaaaataatattaataacataatttgaaggaaacaccataagagaattgtaaaggaaattggagaataaactgagacgttgact |
326 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13600782 |
taaagcaaaaaaaataaaattaataacataatttgaaggaaacaccataagagaattgtaaaggaaattggggaataaactgagacgttgact |
13600874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 13511025 - 13511096
Alignment:
| Q |
8 |
aaccttgcttcaatttcacatattcagtaatcaagtttcctctataatgatacatggaaattgcattaattt |
79 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13511025 |
aaccttgcttcaatttcacatattcagtaatcaagtttcctctataatgatacatggaaattgcattaattt |
13511096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 13600556 - 13600627
Alignment:
| Q |
8 |
aaccttgcttcaatttcacatattcagtaatcaagtttcctctataatgatacatggaaattgcattaattt |
79 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13600556 |
aaccttgcttcaatttcacatattcagtaatcaagtttcctctataatgatacatggaaattgcattaattt |
13600627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 6e-30; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 395 - 485
Target Start/End: Original strand, 16798835 - 16798926
Alignment:
| Q |
395 |
ataatcacagtcaacaattatttattatttt-agttgtatcaaaagataagagagaatgagagaatcaataaccctggtcggccacgataat |
485 |
Q |
| |
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||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| |
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| T |
16798835 |
ataatcagagtcaacaattatttattatttttagttgtatcaaaagataagagagaaggagagaatcaataaccctggtgggccgcgataat |
16798926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 395 - 485
Target Start/End: Original strand, 16840186 - 16840277
Alignment:
| Q |
395 |
ataatcacagtcaacaattatttattatttt-agttgtatcaaaagataagagagaatgagagaatcaataaccctggtcggccacgataat |
485 |
Q |
| |
|
||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
16840186 |
ataatcagaatcaacaattatttattatttttagttgtatcaaaagataagagagaaggagagaatcaataaccctggtcggccgcgataat |
16840277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 211 - 321
Target Start/End: Complemental strand, 17585268 - 17585157
Alignment:
| Q |
211 |
atgttctaaaaaccaccttgttctgtaaagcaaaaa-ataatattaataacataatttgaaggaaacaccataagagaattgtaaaggaaattggagaat |
309 |
Q |
| |
|
|||||||||||| |||| ||||||| | |||||||| | || ||||| ||||| ||||||||||||||| ||||||||| | ||||||||||||||||| |
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|
| T |
17585268 |
atgttctaaaaagcaccatgttctggatagcaaaaagaaaaaattaacaacatgatttgaaggaaacacaataagagaactagaaaggaaattggagaat |
17585169 |
T |
|
| Q |
310 |
aaactgagacgt |
321 |
Q |
| |
|
|||||||||||| |
|
|
| T |
17585168 |
aaactgagacgt |
17585157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 17585476 - 17585404
Alignment:
| Q |
8 |
aaccttgctt-caatttcacatattcagtaatcaagtttcctctataatgatacatggaaattgcattaattt |
79 |
Q |
| |
|
|||||||||| || ||| |||||||||||||||||||||| |||||||||| ||| |||||||||||||| |
|
|
| T |
17585476 |
aaccttgctttcagtttgacatattcagtaatcaagtttctcatataatgataattgggaattgcattaattt |
17585404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 26702820 - 26702757
Alignment:
| Q |
8 |
aaccttgcttcaatttcacatattcagtaatcaagtttcctctataatgatacatggaaattgcattaattt |
79 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||| |
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| T |
26702820 |
aaccttgcttcaatttcacatatt--------aagtttcctgtataatgatacatggaaattgctttaattt |
26702757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 26972553 - 26972490
Alignment:
| Q |
8 |
aaccttgcttcaatttcacatattcagtaatcaagtttcctctataatgatacatggaaattgcattaattt |
79 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
26972553 |
aaccttgcttcaatttcacatatt--------aagtttcctgtataatgatacatggaaattgctttaattt |
26972490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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