View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4916-Insertion-4 (Length: 559)
Name: NF4916-Insertion-4
Description: NF4916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4916-Insertion-4 |
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| [»] chr2 (10 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 520; Significance: 0; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 8 - 559
Target Start/End: Original strand, 39839735 - 39840286
Alignment:
| Q |
8 |
ggttcctctcgtcaaagcaaaggtatttatttccattcataataattttcattttcttgcctgttctgtgaattggggcccgcttagggattttgagaaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839735 |
ggttcctctcgtcaaagcaaaggtatttatttccattcataataattttcattttcttgcctgttctgtgaattggggcccgcttagggattttgagaaa |
39839834 |
T |
|
| Q |
108 |
tggaattgaacaaactctcagacgcacttcaaaaaatgcaacatcatccttcgtcttcgtcttctgctgatcttaccgcctcggaaatagtagacagatt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39839835 |
tggaattgaacaaactctcagacgcacttcaaaaaatgcaacatcatccttcgtcttcgtcttctgctgatcttaccgcctcggaaatagtcagcagatt |
39839934 |
T |
|
| Q |
208 |
tcgtcttcgtctattgagtcttcgtgctcgaaggtcaccacctggtgagtgagtttaacatttatattgttctgttgttcgttcgttatgtttcattcac |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839935 |
tcgtcttcgtctattgagtcttcgtgctcgaaggtcaccacctggtgagtgagtttaacatttatattgttctgttgttcgttcgttatgtttcattcac |
39840034 |
T |
|
| Q |
308 |
tattctcaatattgtttgttaatggaagatgataataatgtgttccactgtagagaattggggcttagggattttgagaaattgaacaaaccctaagccc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39840035 |
tattctcaatattgtttgttaatggaagatgataataatgtgttccactgtagagaattgtggcttagggattttgagaaattgaacaaaccctaagccc |
39840134 |
T |
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| Q |
408 |
caattcacacttatcttattgttgtctaatttctataactatcataattggttcttctttcttattctctctcagacgcacgtcaaaaaatgcccgctgc |
507 |
Q |
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| T |
39840135 |
caattcacacttatcttatcgttgtctaatttctataactatcataattggttcttctttcttattctctctcagacgtacgtcaaaaaatgcccgctgc |
39840234 |
T |
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| Q |
508 |
tcctctgaaaccccgcagaataagctcccgcagaagaatcgaaactagtcaa |
559 |
Q |
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| T |
39840235 |
tcctctgaaaccccgcagaataagctcccgcagaagaagcgcaactagtcaa |
39840286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 104 - 422
Target Start/End: Complemental strand, 44798584 - 44798259
Alignment:
| Q |
104 |
gaaatggaattgaacaaactctcagacgcacttcaaaaaatgcaacatcatccttcgtcttcgtcttc------tgctgatcttaccgcctc---ggaaa |
194 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||| || |||| || | ||||| |
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| T |
44798584 |
gaaatggaattgaacaaactctcagacttacttcaaaaaatggaacatcatccttcgtcttcgtcttcgtcttctgctgctcctaccacccccttggaaa |
44798485 |
T |
|
| Q |
195 |
tagtagacagatttcgtcttcgtctattgagtcttcgtgctcgaaggtcaccacc---tggtgagtgagtttaacatttatattgttctgttgttcgttc |
291 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
44798484 |
tagtcagcagatttcgtcttcgtctattgagtcttcgtgctcgaaggtcaccaccacctggtgagtgagtttaacatttatattgttctgttgttcgttc |
44798385 |
T |
|
| Q |
292 |
gttatgtttcattcactattctcaatattgtttgttaatggaagatgataataatgtgttccactgtagagaatt-ggggcttagggattttgagaaatt |
390 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||| ||||| |||||||||||||||||||||||| |
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| T |
44798384 |
gttatgtttcattcactattctcaatgttgtttgttaatggaagatga---taatgtgttccgctgt---gaattgggggcttagggattttgagaaatt |
44798291 |
T |
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| Q |
391 |
gaacaaaccctaagccccaattcacacttatc |
422 |
Q |
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| T |
44798290 |
gaacaaaccctaagccccaattcacacttatc |
44798259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 156 - 422
Target Start/End: Original strand, 35161583 - 35161852
Alignment:
| Q |
156 |
cttcgtcttcgtcttctgctgatcttaccgcc---tcggaaatagtagacagatttcgtcttcgtctattgagtcttcgtgctcgaaggtcacc---acc |
249 |
Q |
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||||||||||||||||||||| || |||| || ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
35161583 |
cttcgtcttcgtcttctgctgctcctaccaccccctcggaaatagtcagcagatttcgtcttcgtgtattgagtcttcgtgctcgaaggtcaccaccacc |
35161682 |
T |
|
| Q |
250 |
tggtgagtgagtttaacatttatattgttctgttgttcgttcgttatgtttcattcactattctcaatattgtttgttaatggaagatgataataatgtg |
349 |
Q |
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| T |
35161683 |
tggtgagtgagtttaacatttatattgttctgttgttcgttcgttatgtttcattcactattctcaatgttgtttgttaatggaagatg---ataatgtg |
35161779 |
T |
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| Q |
350 |
ttccactgtagagaattggggcttagggattttgagaaattgaacaaaccctaagccccaattcacacttatc |
422 |
Q |
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| T |
35161780 |
ttccactttagagaattggggcttagggattttgagtaattgaacaaaccctaagccccaattcacacttatc |
35161852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 106 - 280
Target Start/End: Original strand, 39844740 - 39844923
Alignment:
| Q |
106 |
aatggaattgaacaaactctcagacgcacttcaaaaaatgcaacatcatccttcgtcttcgtcttctgctgatcttaccgcctcggaaatagtagacaga |
205 |
Q |
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| T |
39844740 |
aatggaattgaacaaaccctcggtcgcacttcaaaaaatgcaacatcatccttcgtcttcgtcttttgctgatcttaccgactcggaaatagtcagcaga |
39844839 |
T |
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| Q |
206 |
tttcgtcttcgtctattgagtcttcg------tgctcgaaggt---caccacctggtgagtgagtttaacatttatattgttct |
280 |
Q |
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| T |
39844840 |
taccgtcttcgtctatctcgtcttggtccatttgctcgaaggtcaccaccacctggtgagtgagtttaacatttatattattct |
39844923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 433 - 532
Target Start/End: Original strand, 39845046 - 39845143
Alignment:
| Q |
433 |
ctaatttctataactatcataattggttcttctttcttattctctctcagacgcacgtcaaaaaatgcccgctgctcctctgaaaccccgcagaataagc |
532 |
Q |
| |
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| T |
39845046 |
ctaatttctataactatcataattgcttcttctttcttat--tctttcagacgtacatcaaaaaatgcctgctgctcctctgaaaccccgcagaagaagc |
39845143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 326 - 392
Target Start/End: Original strand, 39844963 - 39845026
Alignment:
| Q |
326 |
ttaatggaagatgataataatgtgttccactgtagagaattggggcttagggattttgagaaattga |
392 |
Q |
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| T |
39844963 |
ttaatggaagatgataa---tgtgttccactgtagagaattggggcttagggattttgagaaattga |
39845026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 500
Target Start/End: Complemental strand, 44631251 - 44631200
Alignment:
| Q |
449 |
tcataattggttcttctttcttattctctctcagacgcacgtcaaaaaatgc |
500 |
Q |
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| T |
44631251 |
tcataattgcttcttctttattattctctctcagacgtacatcaaaaaatgc |
44631200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 500
Target Start/End: Complemental strand, 44798231 - 44798180
Alignment:
| Q |
449 |
tcataattggttcttctttcttattctctctcagacgcacgtcaaaaaatgc |
500 |
Q |
| |
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| T |
44798231 |
tcataattgcttcttctttattattctctctcagacgtacatcaaaaaatgc |
44798180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 44631224 - 44631184
Alignment:
| Q |
122 |
ctctcagacgcacttcaaaaaatgcaacatcatccttcgtc |
162 |
Q |
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| T |
44631224 |
ctctcagacgtacatcaaaaaatgcaacatcctccttcgtc |
44631184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 44798204 - 44798164
Alignment:
| Q |
122 |
ctctcagacgcacttcaaaaaatgcaacatcatccttcgtc |
162 |
Q |
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| T |
44798204 |
ctctcagacgtacatcaaaaaatgcaacatcctccttcgtc |
44798164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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