View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4916-Insertion-5 (Length: 454)
Name: NF4916-Insertion-5
Description: NF4916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4916-Insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 7e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 16644819 - 16645006
Alignment:
| Q |
12 |
aaggaacagatgaaaagattcttttttagttgttgaaagagagggctgaatctcgtaaatacttacaactactatatatattttcatgcctgtaaagggc |
111 |
Q |
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| T |
16644819 |
aaggaacagatgaaaagattcttttttagttgttgaaagagagggctgaatctcgtaaatacttacaactactatatattttttcatgcctgtaaagaga |
16644918 |
T |
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| Q |
112 |
acgaatgctagtgcagtttagagttgcatccactacactagtaagtagtagtaacatattacattgttaaaattacgaaactagtgag |
199 |
Q |
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| T |
16644919 |
acgaatgctagtgcattttagagttgcatccactacactagtaagtagtagtaacatattacattgttaaaaatacgaaactagtgag |
16645006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 275 - 417
Target Start/End: Original strand, 16645071 - 16645213
Alignment:
| Q |
275 |
acatggatcattcgagtgaggaatcaactttatgaactgatcgagagaaagccaatacatcattaggagcttgagctgtttcaccatttgaaattatgtt |
374 |
Q |
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| T |
16645071 |
acatgaatcattcgagtgaggaatcaactttatgaactgatcgagagaaagccaatacatcattaggagcttgagctgtttcaccatttgaaattatgtt |
16645170 |
T |
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| Q |
375 |
gtcacgaatgatccttttggtcactgtatcactctctaattcc |
417 |
Q |
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| T |
16645171 |
gtcacgaatgatccttttggtcactgtgtcattctctaattcc |
16645213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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