View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4916-Insertion-7 (Length: 446)
Name: NF4916-Insertion-7
Description: NF4916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4916-Insertion-7 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 9 - 353
Target Start/End: Complemental strand, 5799515 - 5799170
Alignment:
| Q |
9 |
aaaagagaataaaaaatgccaaaattatcatttaatagatatgtaaatatcattactcttcatttttaataaactaatatcaattttatcttcatattta |
108 |
Q |
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| T |
5799515 |
aaaagagaataaaaaatgccaaaattatcatttaatagatatataaatatcattactcttcatttttaataaactaatatcaattttatcttcatattta |
5799416 |
T |
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| Q |
109 |
agcacttatgatcaatttagttcttacatcatctcgagaataattgaaatgagtaacatttaaccgtgcttttgaaatattaataaactcttagaacata |
208 |
Q |
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| T |
5799415 |
agcacctatgatcaatttagttcttatatcatcttgagaataattgaaatgagtaacatttaaccgtgctttcgaaatattaataaactcttagaacata |
5799316 |
T |
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| Q |
209 |
ggcattcactataaacttgtaaatttgag-nnnnnnnttactcccaaatttgacaataaagtcttcctgaacactaggtctcttttaaaattattttcga |
307 |
Q |
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| T |
5799315 |
gacatccactataaacttgtaaatttgagaaaaaaaattactcccaaatttgacaataaagtcttcctgaacactaggcctcttttaaagttattttcga |
5799216 |
T |
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| Q |
308 |
aaagaaagttactcggtatatcatattaagctccgagagcttgttt |
353 |
Q |
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| T |
5799215 |
aaagaaagttacttagtatatcatattaagctctgagagcttgttt |
5799170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 377 - 437
Target Start/End: Complemental strand, 5799173 - 5799113
Alignment:
| Q |
377 |
gtttaaaaacatattctgattgtattaaatcttcaaactcaagtggttgcttgacatatac |
437 |
Q |
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| T |
5799173 |
gtttaaaaacttactctgattgtattaaatcttcaaactcaagtggttgcttgacatatac |
5799113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 287 - 436
Target Start/End: Original strand, 12751961 - 12752109
Alignment:
| Q |
287 |
ctcttttaaaattattttcgaaaagaaagttactcggtatatcatattaagctccgagagcttgttttagactatagagtgacttcttaagtttaaaaac |
386 |
Q |
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| T |
12751961 |
ctcttttaaagtcattttctaaaagaaagttactcagtctatcacaccaagctttgggagcttgtttcagaccataaagtgacttcttaagtttgaaaac |
12752060 |
T |
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| Q |
387 |
atattctgattgtattaaatcttcaaactcaagtggttgcttgacatata |
436 |
Q |
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| T |
12752061 |
atactctcaatgt-ttaaatcttgaaacctaggtggttgtttcacatata |
12752109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 413
Target Start/End: Complemental strand, 20766297 - 20766228
Alignment:
| Q |
344 |
gagcttgttttagactatagagtgacttcttaagtttaaaaacatattctgattgtattaaatcttcaaa |
413 |
Q |
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| T |
20766297 |
gagcttgtttcagaccatagagtgatttattaagtttaaagacatattcaggatgttttaaatcttcaaa |
20766228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 287 - 434
Target Start/End: Original strand, 14977775 - 14977922
Alignment:
| Q |
287 |
ctcttttaaaattattttcgaaaagaaagttactcggtatatcatattaagctccgagagcttgttttagactatagagtgacttcttaagtttaaaaac |
386 |
Q |
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| T |
14977775 |
ctcttttaaaatcattttctaaaagaaagttactcggtctatcataccaagctctaggagcttgtttcagatcataaagtgatttcttaagtttgaaaat |
14977874 |
T |
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| Q |
387 |
atattctgattgtattaaatcttcaaactcaagtggttgcttgacata |
434 |
Q |
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| T |
14977875 |
atactctgggtgttttaaatattcaaacccaagttgttaattgacata |
14977922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 389
Target Start/End: Original strand, 18159800 - 18159844
Alignment:
| Q |
345 |
agcttgttttagactatagagtgacttcttaagtttaaaaacata |
389 |
Q |
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| T |
18159800 |
agcttgtttaagaccataaagtgatttcttaagtttaaaaacata |
18159844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 287 - 425
Target Start/End: Original strand, 26705428 - 26705566
Alignment:
| Q |
287 |
ctcttttaaaattattttcgaaaagaaagttactcggtatatcatattaagctccgagagcttgttttagactatagagtgacttcttaagtttaaaaac |
386 |
Q |
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| T |
26705428 |
ctcttttaaaattgttttcaaaaagaaagttactcagtgtatcataccaagctctgggagcttgtttcagatcataaaatgactttttcagtttaaaaac |
26705527 |
T |
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| Q |
387 |
atattctgattgtattaaatcttcaaactcaagtggttg |
425 |
Q |
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| T |
26705528 |
atactttgggtattttaaatcttcaaacccaggtggttg |
26705566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 434
Target Start/End: Original strand, 23390627 - 23390714
Alignment:
| Q |
347 |
cttgttttagactatagagtgacttcttaagtttaaaaacatattctgattgtattaaatcttcaaactcaagtggttgcttgacata |
434 |
Q |
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| T |
23390627 |
cttgtttcaaaccatatagtgacctcttaagtttgaaaacataatctgggtgttttaaatcttcaaactcatgtggttgcttcacata |
23390714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 417
Target Start/End: Complemental strand, 26708 - 26657
Alignment:
| Q |
366 |
tgacttcttaagtttaaaaacatattctgattgtattaaatcttcaaactca |
417 |
Q |
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| T |
26708 |
tgacttttaaagtttaaaaacatgttctcattgttttaaatcttcaaactca |
26657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 389
Target Start/End: Original strand, 9879797 - 9879891
Alignment:
| Q |
295 |
aaattattttcgaaaagaaagttactcggtatatcatattaagctccgagagcttgttttagactatagagtgacttcttaagtttaaaaacata |
389 |
Q |
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| T |
9879797 |
aaatcattttctagaagaaagttacttagtctatcatgtcaagctctaggagcttgttttagaccatataatgacttcttaagtttgtaaacata |
9879891 |
T |
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