View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4916-Insertion-8 (Length: 335)

Name: NF4916-Insertion-8
Description: NF4916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4916-Insertion-8
NF4916-Insertion-8
[»] chr3 (1 HSPs)
chr3 (11-335)||(52392838-52393159)


Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 335
Target Start/End: Original strand, 52392838 - 52393159
Alignment:
Q  11 ttggttggtatatgggcgctaattttattttgccacttataattctgcattgaataatgttaatttatccataaggttttggtatttatttttctatatt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52392838 ttggttggtatatgggcgctaattttattttgccacttataattctgcattgaataatgttaatttatccataaggttttggtatttatttttctatatt 52392937  T
Q  111 tactcaacacatataagggaaatgtctgtaccaannnnnnnnnnnnnnnnnggggaacggattctaagatgtattgtaaatataggaaattcagtattaa 210  Q
    ||||||||||||||||||||||||||||||||||                 || ||||||||||||||||||||||||||||||||||||||||||||||    
T  52392938 tactcaacacatataagggaaatgtctgtaccaaaaaaataataataa---ggagaacggattctaagatgtattgtaaatataggaaattcagtattaa 52393034  T
Q  211 atttaattaacataacaaaaattgttttttccttttcctaaacaaaggatcgtgttttctggatttttctagtcatgtgctacggtttgggcttttgtct 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52393035 atttaattaacataacaaaaattgttttttccttttcctaaacaaaggatcgtgttttctggatttttctagtcatgtgctacggtttgggcttttgtct 52393134  T
Q  311 tctgctttgttgtgagttgtttttg 335  Q
     ||||||||||||||||||||||||    
T  52393135 gctgctttgttgtgagttgtttttg 52393159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University