View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4916_high_10 (Length: 273)
Name: NF4916_high_10
Description: NF4916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4916_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 44005951 - 44005707
Alignment:
| Q |
18 |
gtattgaatttgcttatattgctctcaatttgaagaatttggttatattatgtgnnnnnnntttgtgtttcactgtaaaaaagaaaaccacaccgcttat |
117 |
Q |
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| T |
44005951 |
gtattgaatttgcttatattgctctcaatttgaagaatttggttatattatgtgaaaaaaatttgtgtttcactgtaaaaaagaaaaccacaccgcttat |
44005852 |
T |
|
| Q |
118 |
ttgcagcaacagttaaagaaaatnnnnnnnnnn-tggcagcagcaatattattaggaacttacgtgcagggacaagagaaaatcaatttacttgcaggga |
216 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44005851 |
ttgcagcaacagttaaagaaaataaaaaaaaaaatggcagcagcaatattattaggaacttacgtgcagggacaagagaaaatcaatttacttgcaggga |
44005752 |
T |
|
| Q |
217 |
caagagaaaaatagtgggtgcattaattactctttatcctgttca |
261 |
Q |
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| T |
44005751 |
caagagaaaaatagtgggtgcattaattactctttatcctgttca |
44005707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 4126655 - 4126830
Alignment:
| Q |
21 |
ttgaatttgcttatattgctctcaatttgaagaatttggttatattatgtgnnnnnnntttgtgtttcactgtaaaaaagaaaaccacaccgcttatttg |
120 |
Q |
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| T |
4126655 |
ttgaatttggttatattgctctcaatttgaggaatttggttatattatgtgaaaaaaatttgcgtttcactgtaaaaaagaaaaccacaccgcttaattg |
4126754 |
T |
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| Q |
121 |
cagcaacagttaaagaaaatnnnnnnnnnntggcagcagcaatattattaggaacttacgtgcagggacaagagaaa |
197 |
Q |
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| T |
4126755 |
cagcaacaactaaagaaaat-aaaaaaaaatggcagcaaaaatattgttaggaacttacgtgcagcaacaagagaaa |
4126830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 509256 - 509302
Alignment:
| Q |
151 |
tggcagcagcaatattattaggaacttacgtgcagggacaagagaaa |
197 |
Q |
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|||||||| ||||||||||||||||||||||||||| | |||||||| |
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| T |
509256 |
tggcagcaccaatattattaggaacttacgtgcaggaataagagaaa |
509302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 4561051 - 4561101
Alignment:
| Q |
21 |
ttgaatttgcttatattgctctcaatttgaagaatttggttatattatgtg |
71 |
Q |
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| T |
4561051 |
ttgaatttggttatattgctgtcaatttgagaaatttggttatattatgtg |
4561101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 509114 - 509164
Alignment:
| Q |
21 |
ttgaatttgcttatattgctctcaatttgaagaatttggttatattatgtg |
71 |
Q |
| |
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||||||||| |||||| || ||||||||| |||||||||||||||||||| |
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| T |
509114 |
ttgaatttggttatatagcagtcaatttgaggaatttggttatattatgtg |
509164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 27002102 - 27002275
Alignment:
| Q |
19 |
tattgaatttgcttatattgctctcaatttgaagaatttggttatattatgtgnnnnnnntttgtgtttcactgtaaaaaagaaaaccacaccgcttatt |
118 |
Q |
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||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| | |
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| T |
27002102 |
tattgaatttggttatattgctctcaatttgaggaatttggttatattatgtgaaaaaaa--tgtgtttcaccgtaaaaaagaaaaccacaccgcttaat |
27002199 |
T |
|
| Q |
119 |
tgcagcaacagttaaagaaaatnnnnnnnnnntggcagcagcaatattattaggaacttacgtgcagggacaagagaaaat |
199 |
Q |
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|| ||||| ||| ||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
27002200 |
tgtagcaatagtgaaagaaa-----gaaaaaatggcagcagcaatattatcaggaacttacgtgcaggaacaagagaaaat |
27002275 |
T |
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