View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4916_high_2 (Length: 678)
Name: NF4916_high_2
Description: NF4916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4916_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 363
Target Start/End: Complemental strand, 25729617 - 25729278
Alignment:
| Q |
19 |
aacttggggtacacatttggtgctagtggtattcaatattactttttggagatttttgagcaaaacaaaaatgaaatctatcttctaaagaaaaagaatg |
118 |
Q |
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| T |
25729617 |
aacttggggtacacatttggtgctagtggtattcaatatt---ttttggagatttttgaggaaaacaaaaatgaaatctatcttctaaagaaaaacaatg |
25729521 |
T |
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| Q |
119 |
atcaaaatgatttttgttagaaactactcagaataactttttatttaaagcagcttttatattctaaatttttaacggttgtatcaattagggatgaaaa |
218 |
Q |
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| T |
25729520 |
atcaaaatgatttttgtt-gaaactactcagaataactttttatttaaagcagcttttatattcttaatttttaacggttgtatcaattacggatgaaaa |
25729422 |
T |
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| Q |
219 |
ctccnnnnnnntattattttaaaagggattattttgaaaataagtttaagaaacaaaccttgatcagttttattttgaaaactccaagtgattgattaan |
318 |
Q |
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| T |
25729421 |
ctcaaaaaaaatattattttaaaagggattattttgaaaataagtttaagaaacaaaccttgatctgttttattttgaaaactccaagtgattgattaa- |
25729323 |
T |
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| Q |
319 |
nnnnnnnnattcaattaattactataatattattcaagtgaaatt |
363 |
Q |
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| T |
25729322 |
ttttttttattcaattaattactataatattattcaagtgaaatt |
25729278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 434 - 668
Target Start/End: Complemental strand, 25729228 - 25728999
Alignment:
| Q |
434 |
ctattagttaaacaaattagaggcctaaatattctttgaggccaaaagcggctactttatttatggnnnnnnnnnnccttctagtaggatagatgttaat |
533 |
Q |
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| T |
25729228 |
ctattagttaaacaaattagaggcctaaatattctttgaggccaaaagcggctactttatttatggttttttttt--cttccagaaggatagatgttaat |
25729131 |
T |
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| Q |
534 |
agttactacttattagattaatatttattcttttcgtccgaatttaatttcatggcttttaatttcttatcatttatctcaaatcagttgaactatcaaa |
633 |
Q |
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| T |
25729130 |
agttactactta---gattaatatttacttttttcgtccgaatttaatttcatgacttttaatctcttatcatttatctcaaatcagttgaactatcgaa |
25729034 |
T |
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| Q |
634 |
catcgttatttatggtcttctttgaccggcctttg |
668 |
Q |
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| T |
25729033 |
catcgttatttatagtcttctttgaccggcctttg |
25728999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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