View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4916_high_3 (Length: 465)
Name: NF4916_high_3
Description: NF4916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4916_high_3 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 196 - 453
Target Start/End: Complemental strand, 45728060 - 45727803
Alignment:
| Q |
196 |
cttacttgattctcatgttgggctcttaaccgcccaacacaaattaaaaaataaatattgcgcaatatatttttctatttccgtgttttaattgtttctc |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45728060 |
cttacttgattctcatgttgggctcttaaccgcccaacacaaattaaaaaataaatattgcgcaatatatttttctatttccgtgttttaattgtttctc |
45727961 |
T |
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| Q |
296 |
gcagtctcgatactcgctcaaactaccttcttcttcttagttctcttccaactcacttgagcctaacccttctacgttctcttctctgttgaccactagc |
395 |
Q |
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||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45727960 |
gcactctcgatactcgctcaaactaccttcttcttcatagttctcttccaactcacttgagcctaacccttctacgttctcttctatgttgaccactagc |
45727861 |
T |
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| Q |
396 |
gttctttttctccgttctcacctgaagctaaccctccaacacccaacacacgttcttc |
453 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45727860 |
gttctttttctccgttctcacctgaagctaaccctcgaacacccaacacacgttcttc |
45727803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 45728649 - 45728460
Alignment:
| Q |
18 |
caacatcggctgacccacaagacgacccacgttcaacattctcattcttattcttttttgaatgtgatggtgaagatctcttccggcttaaatactagag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45728649 |
caacatcggctgacccacaagacgacccacgttcaacattctcattcttattcttttttgaatgtgatggtgaagatctcttccggcttaaatactggag |
45728550 |
T |
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| Q |
118 |
-ttcttaatttgaattcactcataagtatcaagtatgtgtatgtagcaggtaagggagagttttgttgcatagtgccgtcttacttgattc |
207 |
Q |
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| T |
45728549 |
attcttaatttgaattcactcataagcat-aagtatgtgtatgtagcaggtaagggagagttttgttgcatagtgccatcttacttgattc |
45728460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 320 - 444
Target Start/End: Complemental strand, 45734417 - 45734293
Alignment:
| Q |
320 |
accttcttcttcttagttctcttccaactcacttgagcctaacccttctacgttctcttctctgttgaccactagcgttctttttctccgttctcacctg |
419 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||| | |||||| | ||||||||| ||||||||||||| |
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| T |
45734417 |
accttcttcttctcagttctcttccaactcacttgaacctaacccttctatgttctcttctccatccaccactgtcattctttttcaccgttctcacctg |
45734318 |
T |
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| Q |
420 |
aagctaaccctccaacacccaacac |
444 |
Q |
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| T |
45734317 |
aagacaacccttcaacacccaacac |
45734293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 45734951 - 45734894
Alignment:
| Q |
19 |
aacatcggctgacccacaagacgacccacgttcaacattctcattcttattctttttt |
76 |
Q |
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|||||| |||||||||| ||||||| || ||||||||||| |||||||||||||||| |
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| T |
45734951 |
aacatcagctgacccacgagacgacacaacttcaacattcttattcttattctttttt |
45734894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 82635 - 82597
Alignment:
| Q |
196 |
cttacttgattctcatgttgggctcttaaccgcccaacac |
235 |
Q |
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| T |
82635 |
cttacttgattctcatgtt-ggctcttaaccgcccaacac |
82597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 18125089 - 18125051
Alignment:
| Q |
196 |
cttacttgattctcatgttgggctcttaaccgcccaacac |
235 |
Q |
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| T |
18125089 |
cttacttgattctcatgtt-ggctcttaaccgcccaacac |
18125051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 30031167 - 30031132
Alignment:
| Q |
199 |
acttgattctcatgttgggctcttaaccgcccaacac |
235 |
Q |
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|||||||||||||||||| |||||||||||||||||| |
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| T |
30031167 |
acttgattctcatgttgg-ctcttaaccgcccaacac |
30031132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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