View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4916_high_4 (Length: 402)

Name: NF4916_high_4
Description: NF4916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4916_high_4
NF4916_high_4
[»] chr1 (6 HSPs)
chr1 (10-402)||(44005296-44005688)
chr1 (11-361)||(43986723-43987070)
chr1 (179-293)||(43907628-43907742)
chr1 (167-293)||(19568035-19568161)
chr1 (179-293)||(23681599-23681713)
chr1 (184-259)||(42414142-42414217)
[»] chr8 (2 HSPs)
chr8 (191-258)||(24042477-24042544)
chr8 (209-258)||(42699650-42699699)
[»] chr5 (2 HSPs)
chr5 (142-293)||(9363537-9363688)
chr5 (202-259)||(8838505-8838562)
[»] chr2 (4 HSPs)
chr2 (176-293)||(20604329-20604446)
chr2 (199-258)||(24001587-24001646)
chr2 (197-259)||(20612153-20612215)
chr2 (197-293)||(20894547-20894643)
[»] chr7 (2 HSPs)
chr7 (197-293)||(41682164-41682260)
chr7 (191-225)||(19879693-19879727)
[»] chr4 (2 HSPs)
chr4 (179-258)||(44669372-44669451)
chr4 (179-258)||(44688648-44688727)


Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 10 - 402
Target Start/End: Original strand, 44005296 - 44005688
Alignment:
Q  10 aagaatatcataacagtgttccatgctgaagttaagtggtgtaatcgagtttgatggattttccaacaatggtttaacagggtaagataatatttcgtta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44005296 aagaatatcataacagtgttccatgctgaagttaagtggtgtaatcgagtttgatggattttccaacaatggtttaacagggtaagataatatttcgtta 44005395  T
Q  110 ggattacggcggactccgattccgctagagaacaattgtggagaatcggtagagttaagaaagtgggtttttgtgaattggggattagagattagggttt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44005396 ggattacggcggactccgattccgctagagaacaattgtggagaatcgatagagttaagaaagtgggtttttgtgaattggggattagagattagggttt 44005495  T
Q  210 tccaagatttgcaaacgcacttacattgaaggagggatctcaccggaagcttcaaaaggatatcaacgatgagttcttccggcagctgcttcgaaggtac 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44005496 tccaagatttgcaaacgcacttacattgaaggagggatctcaccggaagcttcaaaaggatatcaacgatgagttcttccggcagctgcttcgaaggtac 44005595  T
Q  310 gtcgtcggtaatcggagaaggaagatattggctgttgacggtggtgtcatcatcacccattgcgcgagtctgttgcaggccttcagccgtttt 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| ||||    
T  44005596 gtcgtcggtaatcggagaaggaagatattggctgttgacggtggtttcatcatcacccattgcgcgtgtatgttgcaggccttcagccatttt 44005688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 11 - 361
Target Start/End: Original strand, 43986723 - 43987070
Alignment:
Q  11 agaatatcataacagtgttccatgctgaagttaagtggtgtaatcgagtttgatggattttccaacaatggtttaacagggtaagataatatttcgttag 110  Q
    |||||||| ||||||||  || |||||||||||||||||||||| |   ||||| ||||||||||||||||||||||||| ||||||| |||||||| ||    
T  43986723 agaatatcgtaacagtgccccgtgctgaagttaagtggtgtaataggagttgatagattttccaacaatggtttaacaggataagatagtatttcgtaag 43986822  T
Q  111 gattacggcggactccgattccgctagagaacaattgtggagaatcggtagagttaagaaagtgggtttttgtgaattggggattagagattagggtttt 210  Q
    ||||||||| |||||| |   ||  ||| |||| ||||||| || |||| ||| | ||||||||| | |||| |||||| || |  ||||||||||||||    
T  43986823 gattacggcagactccaagggcggcagataacagttgtggataagcggttgaggtcagaaagtggttgtttgcgaattgtgggtctgagattagggtttt 43986922  T
Q  211 ccaagatttgcaaacgcacttacattgaaggagggatctcaccggaagcttcaaaaggatatcaacgatgagttcttccggcagctgcttcgaaggtacg 310  Q
    ||| |||||||||| ||| ||  ||||||| |||||| ||||||||||  |||||||||| |||| ||||||||||| |||||| ||||| ||  |||      
T  43986923 ccatgatttgcaaatgcatttgaattgaagcagggatttcaccggaagtctcaaaaggatctcaatgatgagttctttcggcagttgcttggagagta-- 43987020  T
Q  311 tcgtcggtaatcggagaaggaagatattggctgttgacggtggtgtcatca 361  Q
     |||||| | | ||||||||||| | |||| ||||||| ||||| ||||||    
T  43987021 -cgtcggcagttggagaaggaagctgttggttgttgacagtggtatcatca 43987070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 179 - 293
Target Start/End: Complemental strand, 43907742 - 43907628
Alignment:
Q  179 tttgtgaattggggattagagattagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaagcttcaaaaggatatcaacga 278  Q
    |||| |||||||| || |||||||||||||||||| ||||||||||| |||||  |||| |  |||||| ||||||||||| |||||||||| || ||||    
T  43907742 tttgcgaattgggaatcagagattagggttttccatgatttgcaaacacacttgtattggacaagggatttcaccggaagcctcaaaaggatctcgacga 43907643  T
Q  279 tgagttcttccggca 293  Q
    |||||||||||||||    
T  43907642 tgagttcttccggca 43907628  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 167 - 293
Target Start/End: Original strand, 19568035 - 19568161
Alignment:
Q  167 agaaagtgggtttttgtgaattggggattagagattagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaagcttcaaaa 266  Q
    |||| |||||| ||||||||||| | |||||| |||||||||||||| ||||||||||||  |||  |||| || |||||||||||||||||| ||| ||    
T  19568035 agaaggtgggtctttgtgaattgtgaattagaaattagggttttccatgatttgcaaacgagctttaattggagaagggatctcaccggaagcctcagaa 19568134  T
Q  267 ggatatcaacgatgagttcttccggca 293  Q
    |||| || | || || |||||||||||    
T  19568135 ggatgtcgaagaggacttcttccggca 19568161  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 293
Target Start/End: Complemental strand, 23681713 - 23681599
Alignment:
Q  179 tttgtgaattggggattagagattagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaagcttcaaaaggatatcaacga 278  Q
    |||| |||||| ||||| || |||||||||||||| |||||| ||||||||||  |||| || ||||||||||| |||||| ||| ||||||||| | |     
T  23681713 tttgcgaattgaggattggaaattagggttttccatgatttggaaacgcactttaattggagaagggatctcacaggaagcctcagaaggatatcgaagt 23681614  T
Q  279 tgagttcttccggca 293  Q
    ||| |||||||||||    
T  23681613 tgacttcttccggca 23681599  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 259
Target Start/End: Complemental strand, 42414217 - 42414142
Alignment:
Q  184 gaattggggattagagattagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaagc 259  Q
    |||||||||||  ||||||||||||||||| |||||||| || ||| |  ||||||| || ||||| |||||||||    
T  42414217 gaattggggatcggagattagggttttccatgatttgcatacacacctgaattgaagaagtgatcttaccggaagc 42414142  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 258
Target Start/End: Original strand, 24042477 - 24042544
Alignment:
Q  191 ggattagagattagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaag 258  Q
    |||| |||||||||  ||||||||||||| || ||||| ||| |||||||||||||||||||||||||    
T  24042477 ggatcagagattagaattttccaagatttacagacgcatttaaattgaaggagggatctcaccggaag 24042544  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 42699699 - 42699650
Alignment:
Q  209 ttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaag 258  Q
    ||||| ||||||||||| || ||| ||||||||||||||||||| |||||    
T  42699699 ttccatgatttgcaaacacatttaaattgaaggagggatctcacaggaag 42699650  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 293
Target Start/End: Complemental strand, 9363688 - 9363537
Alignment:
Q  142 caattgtggagaatcggtagagttaagaaagtgggtttttgtgaattggggattagagattagggttttccaagatttgcaaacgcacttacattgaagg 241  Q
    |||||||||| || |||||||| | |||||| || | |||| |||||||| ||  ||||||||||||||||| | ||||||||| | |||| |  |||||    
T  9363688 caattgtggataagcggtagagatcagaaagcggttgtttgcgaattgggtatctgagattagggttttccatgttttgcaaacacgcttaaaccgaagg 9363589  T
Q  242 agggatctcaccggaagcttcaaaaggatatcaacgatgagttcttccggca 293  Q
    || ||||| ||||||||  | |  ||||| | ||||||||||||||| ||||    
T  9363588 agtgatcttaccggaagactgaggaggattttaacgatgagttcttctggca 9363537  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 8838505 - 8838562
Alignment:
Q  202 tagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaagc 259  Q
    |||||||||||| ||||||||||| |||||  || ||||||| ||||| |||||||||    
T  8838505 tagggttttccatgatttgcaaacacacttgaatcgaaggagtgatcttaccggaagc 8838562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 293
Target Start/End: Original strand, 20604329 - 20604446
Alignment:
Q  176 gtttttgtgaattggggattagagattagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaagcttcaaaaggatatcaa 275  Q
    |||| ||| ||||| ||||  ||||||||||||||||| ||||| |  ||||||||  |||||||||||||| ||||||||||| || | ||||| ||||    
T  20604329 gtttgtgtaaattgaggatcggagattagggttttccaggatttactcacgcacttgtattgaaggagggatttcaccggaagcctcgagaggatttcaa 20604428  T
Q  276 cgatgagttcttccggca 293  Q
     ||  ||||| |||||||    
T  20604429 agacaagttcatccggca 20604446  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 24001646 - 24001587
Alignment:
Q  199 gattagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaag 258  Q
    ||||||| ||||||||||||| || ||||| ||| ||||||||||||||||||| |||||    
T  24001646 gattaggattttccaagatttacacacgcatttaaattgaaggagggatctcacaggaag 24001587  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 20612153 - 20612215
Alignment:
Q  197 gagattagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaagc 259  Q
    ||||||||||||||||| ||||| || ||||||||  |||| ||||||| | |||||||||||    
T  20612153 gagattagggttttccatgatttacacacgcacttgtattgcaggagggttttcaccggaagc 20612215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 293
Target Start/End: Complemental strand, 20894643 - 20894547
Alignment:
Q  197 gagattagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaagcttcaaaaggatatcaacgatgagttcttccggca 293  Q
    |||||||||| |||||| ||||| || ||||||||  |||| ||||||| | ||||||||||| || | ||||| |||| ||  ||||| |||||||    
T  20894643 gagattagggctttccatgatttacacacgcacttgtattggaggagggttttcaccggaagcctcgagaggatttcaaagacaagttcatccggca 20894547  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 197 - 293
Target Start/End: Original strand, 41682164 - 41682260
Alignment:
Q  197 gagattagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaagcttcaaaaggatatcaacgatgagttcttccggca 293  Q
    ||||||||||||||||| |||||| | |||||| || |||||||||||||  |||| |||||  | |  ||||| |||| |||||||||||||||||    
T  41682164 gagattagggttttccatgatttggacacgcacataaattgaaggagggaagtcactggaagtctgaggaggatctcaaggatgagttcttccggca 41682260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 225
Target Start/End: Original strand, 19879693 - 19879727
Alignment:
Q  191 ggattagagattagggttttccaagatttgcaaac 225  Q
    |||||||| ||||||||||||||||||||||||||    
T  19879693 ggattagaaattagggttttccaagatttgcaaac 19879727  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 44669372 - 44669451
Alignment:
Q  179 tttgtgaattggggattagagattagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaag 258  Q
    |||| |||||||||||  |||||||  ||||||||   ||||||||||||| |  |||||||||||||||||||||||||    
T  44669372 tttgcgaattggggatctgagattaacgttttccagagtttgcaaacgcacctgaattgaaggagggatctcaccggaag 44669451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 44688648 - 44688727
Alignment:
Q  179 tttgtgaattggggattagagattagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaag 258  Q
    |||| |||||||||||  |||||||  ||||||||   ||||||||||||| |  |||||||||||||||||||||||||    
T  44688648 tttgcgaattggggatctgagattaacgttttccagagtttgcaaacgcacctgaattgaaggagggatctcaccggaag 44688727  T

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