View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4916_high_9 (Length: 280)
Name: NF4916_high_9
Description: NF4916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4916_high_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 39029270 - 39029534
Alignment:
| Q |
16 |
agatattcatttccatgatccatagctttgaaaggaactcttctactacaagaagagctataagatgtacacctagaactcatctccgaagactccggtg |
115 |
Q |
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| T |
39029270 |
agatattcatttccatgatccatagctttgaaaggaactcttctactacaagaagagctataagatgtacacctagaactcatctccgaagactccggtg |
39029369 |
T |
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| Q |
116 |
aactttgatcactgagatggtcacccttttcttttttgatcttcttgagagtatgaactagatgatttctactcttcacaaccttgactttaatccctaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39029370 |
aactttgatcactgagatggtcacccttttcttttttgatcttcttgagagtatgaactagatggtttctactcttcacaaccttgactttaatccctaa |
39029469 |
T |
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| Q |
216 |
gctttctatgaacaactgcgaagttcttcttctttcctcatcagtaatgtaaagaatgacatgtg |
280 |
Q |
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| T |
39029470 |
gctttctatgaacaactgcgaagttcttcttctttcctcatcagtaatgtaaagaatgacatgtg |
39029534 |
T |
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