View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4916_low_3 (Length: 479)
Name: NF4916_low_3
Description: NF4916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4916_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Complemental strand, 28184088 - 28183634
Alignment:
| Q |
1 |
cttcaagattttgcgagaaagatttgctcaaagttgtcgacagggagtatgtgtttgcctatgctgatgatccttgcctagctacataccctttgatgca |
100 |
Q |
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| T |
28184088 |
cttcaagattttgcgagaaagatttgctcaaagttgtcgacagggagtatgtgtttgcctatgctgatgatccttgcctagctacataccctttgatgca |
28183989 |
T |
|
| Q |
101 |
aaagttgagacaagtgcttgtggatcatgcattagtgaatgccgaaggagagaagaattcgaacacatcaatcttccaaaagattgcaacatttgaggat |
200 |
Q |
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| T |
28183988 |
aaagttgagacaagtgcttgtggatcatgcattagtgaataccgaaggagagaagaattcgaacacatcaatcttccaaaagattgcaacatttgaggat |
28183889 |
T |
|
| Q |
201 |
gaattgaaggctatcttgccaaaggaagttgaaagtgcaaggacagcatatgaaaatggacaaagtggaatttcaaacaagattaaggaatgtaggtctt |
300 |
Q |
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| T |
28183888 |
gaattgaaggctatcttgccaaaggaagttgaaagtgcaaggacagcatatgaaaatggacaaagtggaatttcaaacaagattaaggaatgtaggtctt |
28183789 |
T |
|
| Q |
301 |
atccattgtacaagtttgttagagaggagttgggaacagcgttgctaaccggtgaaaaagtgatatcgccaggagaagagtgcgacaaattgttcacagc |
400 |
Q |
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| T |
28183788 |
atccattgtacaagtttgttagagaggagttgggaacagcgttgctaaccggtgaaaaagtgatatcgccaggagaagagtgcgacaaattgttcacagc |
28183689 |
T |
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| Q |
401 |
tatgtgccaaggtaaaattgttgatcctcttatggaatgtctcggagagtggaac |
455 |
Q |
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| T |
28183688 |
tatgtgccaaggtaaaattgttgatcctcttatggaatgtctcggagagtggaac |
28183634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 40945331 - 40945785
Alignment:
| Q |
1 |
cttcaagattttgcgagaaagatttgctcaaagttgtcgacagggagtatgtgtttgcctatgctgatgatccttgcctagctacataccctttgatgca |
100 |
Q |
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||||||||||||| || ||||| || | ||||| || || || ||| |||| ||||| ||| |||||||||||| ||||||||||| |||| || |
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| T |
40945331 |
cttcaagattttgtgaaaaagacttattgaaagtggttgatagagagcatgtatttgcttatattgatgatccttgtagtgctacatacccattgagtca |
40945430 |
T |
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| Q |
101 |
aaagttgagacaagtgcttgtggatcatgcattagtgaatgccgaaggagagaagaattcgaacacatcaatcttccaaaagattgcaacatttgaggat |
200 |
Q |
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| T |
40945431 |
aaaactcaggcaagtgttggtagatcatgcattagttaatggagagagtgagaagaatttgaacacttcaatctttcaaaagattgcaacttttgaggaa |
40945530 |
T |
|
| Q |
201 |
gaattgaaggctatcttgccaaaggaagttgaaagtgcaaggacagcatatgaaaatggacaaagtggaatttcaaacaagattaaggaatgtaggtctt |
300 |
Q |
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| T |
40945531 |
gagttgaagagcctcttgccaaaagaggttgaaagtgcaaggaccgcatatgagagtggaaacccaacaattccaaacaagatcaatggatgcagatctt |
40945630 |
T |
|
| Q |
301 |
atccattgtacaagtttgttagagaggagttgggaacagcgttgctaaccggtgaaaaagtgatatcgccaggagaagagtgcgacaaattgttcacagc |
400 |
Q |
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| T |
40945631 |
atccactttacaagtttgttagagaggagttgggaactggtttactaactggagaaaatgtcatttcacccggtgaagtgtgtgacaaattattcacagc |
40945730 |
T |
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| Q |
401 |
tatgtgccaaggtaaaattgttgatcctcttatggaatgtctcggagagtggaac |
455 |
Q |
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| T |
40945731 |
tatgtgtcagggaaaaatcattgatcctcttcttgaatgcttgggagagtggaac |
40945785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 81 - 455
Target Start/End: Original strand, 40959376 - 40959750
Alignment:
| Q |
81 |
gctacataccctttgatgcaaaagttgagacaagtgcttgtggatcatgcattagtgaatgccgaaggagagaagaattcgaacacatcaatcttccaaa |
180 |
Q |
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||||||||||| |||| ||||| | || |||||| | || |||||||||||||| |||| || | |||||||||| |||||| |||||||| |||| |
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| T |
40959376 |
gctacatacccattgagtcaaaaactcaggcaagtgttggtagatcatgcattagttaatggagagagtgagaagaatttgaacacttcaatctttcaaa |
40959475 |
T |
|
| Q |
181 |
agattgcaacatttgaggatgaattgaaggctatcttgccaaaggaagttgaaagtgcaaggacagcatatgaaaatggacaaagtggaatttcaaacaa |
280 |
Q |
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|||||||||| |||||||| || |||||| |||||||||| || ||||||||||||||||| |||||||| | |||| | |||| ||||||| |
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| T |
40959476 |
agattgcaacttttgaggaagagttgaagagcctcttgccaaaagaggttgaaagtgcaaggaccgcatatgagagtggaaacccaacaattccaaacaa |
40959575 |
T |
|
| Q |
281 |
gattaaggaatgtaggtcttatccattgtacaagtttgttagagaggagttgggaacagcgttgctaaccggtgaaaaagtgatatcgccaggagaagag |
380 |
Q |
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||| || | ||| || ||||||||| | ||||||||||||||||||||||||||||| | || ||||| || ||||| || || || || || |||| | |
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| T |
40959576 |
gatcaatggatgcagatcttatccactttacaagtttgttagagaggagttgggaactggtttactaactggagaaaatgtcatttcacccggtgaagtg |
40959675 |
T |
|
| Q |
381 |
tgcgacaaattgttcacagctatgtgccaaggtaaaattgttgatcctcttatggaatgtctcggagagtggaac |
455 |
Q |
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|| |||||||| |||||||||||||| || || ||||| ||||||||||| | ||||| | |||||||||||| |
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| T |
40959676 |
tgtgacaaattattcacagctatgtgtcagggaaaaatcattgatcctcttcttgaatgcttgggagagtggaac |
40959750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 192 - 319
Target Start/End: Original strand, 43217269 - 43217396
Alignment:
| Q |
192 |
tttgaggatgaattgaaggctatcttgccaaaggaagttgaaagtgcaaggacagcatatgaaaatggacaaagtggaatttcaaacaagattaaggaat |
291 |
Q |
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|||||||||||||||||| || | ||||||||||||||||||||||||||| |||| ||| || ||| | || |||| |||||| |||||||||| |
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| T |
43217269 |
tttgaggatgaattgaagtctcttttgccaaaggaagttgaaagtgcaagggttgcatttgagaagggaaattctgaaattccaaacagaattaaggaat |
43217368 |
T |
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| Q |
292 |
gtaggtcttatccattgtacaagtttgt |
319 |
Q |
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| T |
43217369 |
gtaggtcatacccactatacaagtttgt |
43217396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 40550326 - 40550384
Alignment:
| Q |
276 |
aacaagattaaggaatgtaggtcttatccattgtacaagtttgttagagaggagttggg |
334 |
Q |
| |
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||||| || |||||||| ||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
40550326 |
aacaaaatcaaggaatgcaggtcttatccattgtataagtttgttagagaggaattggg |
40550384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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