View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4916_low_8 (Length: 293)
Name: NF4916_low_8
Description: NF4916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4916_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 51 - 279
Target Start/End: Original strand, 28911564 - 28911793
Alignment:
| Q |
51 |
ataaagtatctcacttcttagaattgtcgcccaaattagtattcataacatttgaagttaaagtatatgtttact---tgtgtttcagtatcagtgcaaa |
147 |
Q |
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| T |
28911564 |
ataaagtacctcacttcttagaatagtcgcccaaatttgtattcataacatttgaagctaaagtatatatttactacttgtgttttagtatcagtgcaaa |
28911663 |
T |
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| Q |
148 |
atgaatctaagtaggacacacatgtacgtccaaatatacgtaacagttaataaaatgatattagcatgattgcagactgcataacaagactaggatcatg |
247 |
Q |
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| T |
28911664 |
atgaatctaagtaggacac--atgtacgtccaaatatatgtaacgattaataaaattatattagcatggttacagactgcataacaagactaggatcacg |
28911761 |
T |
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| Q |
248 |
ttaattgttagataaatgtgtctcgtgttaac |
279 |
Q |
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| T |
28911762 |
ttaattgttagataaatgtgtctcgtggtaac |
28911793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 108 - 279
Target Start/End: Original strand, 35608080 - 35608253
Alignment:
| Q |
108 |
ttaaagtatatgtttact---tgtgtttcagtatcagtgcaaaatgaatctaagtaggacacacatgtacgtccaaatatacgtaacagttaataaaatg |
204 |
Q |
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| T |
35608080 |
ttaaagtatatgtttactacttgtgtttcagtatcagtgcaaaatga-tctaagtaggacacacatgtacgtccaaatatacgtgacagttaataaaatg |
35608178 |
T |
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| Q |
205 |
atattagcatgattgcagactgcataacaagactaggatcatgttaattgttagataaatgtgtctcgtgttaac |
279 |
Q |
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| T |
35608179 |
atattagcatgattgcagactgcataacaagactaggatcatgttaattgttagataaatgtgtctcgtgttaac |
35608253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 35607989 - 35608060
Alignment:
| Q |
51 |
ataaagtatctcacttcttagaattgtcgcccaaattagtattcataacatttgaagttaaagtatatgttt |
122 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35607989 |
ataaagtatctcacttcttagaattgtcgcccaaatttgtattcataacatttgaagttaaagtatatgttt |
35608060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 51 - 221
Target Start/End: Original strand, 26512045 - 26512216
Alignment:
| Q |
51 |
ataaagtatctcacttcttagaattgtcgcccaaattagtattcataacatttgaagttaaagtatatgtt---tacttgtgtttcagtatcagtgcaaa |
147 |
Q |
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| T |
26512045 |
ataaagtatctcatttcttagaatagtcgcccaaatttgtattcataacatttgaaactaatgtatatgtttactacttgtgtttcattattagtgtaaa |
26512144 |
T |
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| Q |
148 |
atgaatctaagtaggacacacatgtacgtccaaatatacgtaacagttaataaaatgatattagcatgattgca |
221 |
Q |
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| T |
26512145 |
atgaatctaagtggg--acacatgtccgtctaaatatatgtaacagataataaaatgatattagcatggttgca |
26512216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 34957993 - 34958045
Alignment:
| Q |
51 |
ataaagtatctcacttcttagaattgtcgcccaaattagtattcataacattt |
103 |
Q |
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| T |
34957993 |
ataaagtatctcacttcttagaatagtcgtccaaatttatattcataacattt |
34958045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 279
Target Start/End: Original strand, 252273 - 252418
Alignment:
| Q |
142 |
tgcaaaatgaatctaagtaggacacacatgtacgtccaaatatacgtaacagttaataaaatgatattagca--------tgattgcagactgcataaca |
233 |
Q |
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| T |
252273 |
tgcaaaatgaatctaagtaggacacacatgtacgtccaaatatatgtaatagtaaataagatgatattagcatctgtctctggttgcagactgcatagca |
252372 |
T |
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| Q |
234 |
agactaggatcatgttaattgttagataaatgtgtctcgtgttaac |
279 |
Q |
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| T |
252373 |
agactaggatcatgttaattgttaagtaaacgtgcctcgtggtaac |
252418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 252033 - 252105
Alignment:
| Q |
53 |
aaagtatctcacttcttagaattgtcgcccaaattagtattcataacatttgaagttaaagtatatgtttact |
125 |
Q |
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| T |
252033 |
aaagtatctgacttcttagagtagtcgcccaaacttgtattcataatatttgaagctgaagtatatgtttact |
252105 |
T |
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