View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4917-Insertion-1 (Length: 1004)
Name: NF4917-Insertion-1
Description: NF4917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4917-Insertion-1 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 943; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 943; E-Value: 0
Query Start/End: Original strand, 6 - 1004
Target Start/End: Complemental strand, 42799367 - 42798368
Alignment:
| Q |
6 |
cagttttttgcctcacccgaatccaatcatcccgtgcctcaacaactcgacaactcacctcgagcagcccggatgataattcataggatccacaaggtgt |
105 |
Q |
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| T |
42799367 |
cagttttttgcctcacccgaatccaatcatcccgtgcctcaacaactcgacaactcacctcgagcagcccggatgataattcataggatccacaaggtgt |
42799268 |
T |
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| Q |
106 |
tgactatcctagcattttttggaggatagagaacactaaatattggccatacattaaatgatatgaattggttcatcaaaataaaatcataaacatgatc |
205 |
Q |
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| T |
42799267 |
tgactatcctagcattttttggaggatagagaacactaaatattggccatacattaaatgatatgaattggttcatcaaaataaaatcataaacatgatc |
42799168 |
T |
|
| Q |
206 |
acacataattatattagctgcttaaaatagttgtgattcattagaattatgtttgctttcatatttgcgaagtgcatgaccaatgattgtgctaaaatgt |
305 |
Q |
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| T |
42799167 |
acacataattatattagctgcttaaaatagttgtgattcattagaattatgtttgctttcatatttgcgaagtgcatgaccaatgattgtgctaaaatgt |
42799068 |
T |
|
| Q |
306 |
ttgtacagtgcacaattttttcaatacagaaagggtctaagtccaaacaaaaagagaaattgcaccgaaactaatagaggagtagaaactcgtctactat |
405 |
Q |
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| T |
42799067 |
ttgtacagtgcacaattttttcaatacagaaagggtctaagtccaaacaaaaagagaaattgcaccgaaactaatagaggagaagaaactcgtctactat |
42798968 |
T |
|
| Q |
406 |
cagaattgagcaactggaccaactgagtcagacacaactcataaacaatcaaagcatcattatattctttgcttcatgatatgagtggcatatcttcacc |
505 |
Q |
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| T |
42798967 |
cagaattgagcaactggaccaactgagtcagacacaactc--aaacaatcaaagcatcattatattctttgcttcatgatacgagtggcatatcttcacc |
42798870 |
T |
|
| Q |
506 |
tcccagtccatttctacaagtctttgaatacactcgataagactcctttccaacaatgttcatacattactctgcgtaacataattaacaacagtctctc |
605 |
Q |
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| T |
42798869 |
tcccagtccatttctacaagtctttgaatacactcgataagactcctttccaacaatgttcatacattactctgcgtaacataattaacaacagtctctc |
42798770 |
T |
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| Q |
606 |
tcacaatccacacataactccactgctttaaaacctgtactctttgcaagtcgcaacccttctaaaactccccacaattctgcctcaagctccactcaac |
705 |
Q |
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| T |
42798769 |
tcacaatccacacataactccactgctttaaaacctgtactctttgcaagtcgcaacccttctaaaactccccacaattctgcctcaagctccactcaac |
42798670 |
T |
|
| Q |
706 |
ggcccatgttaaacattttgaaaagcaacagatccagttactgtgattatcccaaagttagccatcacaactggattacattcaaagtctattagctcca |
805 |
Q |
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| T |
42798669 |
ggcccatgttaaacattttgaaaagcaacagatccagttactgtgattatcccaaagttagccatcgcaactggattacattcaaagtctattagctcca |
42798570 |
T |
|
| Q |
806 |
tatatacgtctgaa-cctcttgctctacacttccctgcctgtcatggatcaagattttcctaattctgctacgc-accccaataatagggagcattataa |
903 |
Q |
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| T |
42798569 |
tatatacgtctgaaccctcttgctctacacttccctgcctgtcatggatcttgattttcctaattctgctacgcaaccccaataatagggagcattataa |
42798470 |
T |
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| Q |
904 |
cagcagattggaaaagaaaggtctaaatgaacttataactacattaactacaatgttgacaaagtagtaacatgttccaata-taatatgtgattctatc |
1002 |
Q |
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| T |
42798469 |
cagcagattggaaaagaaaggtctaaatgaacttataactacattaactacaatgttgacaaagtagtaacatcttccaatattaatatgtgattctatc |
42798370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 211 - 464
Target Start/End: Complemental strand, 28762780 - 28762528
Alignment:
| Q |
211 |
taattatattagctgcttaaaatagttgtgattcattagaattatgtttgctttcatatttgcgaagtgcatgaccaatgattgtgctaaaatgtttgta |
310 |
Q |
| |
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|||||| || |||||||||| ||||||||||||||||||||||||||||| |||||| || |||||| |||||||||||||||||||||||||||||| |
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| T |
28762780 |
taattagatgagctgcttaagatagttgtgattcattagaattatgtttgttttcatccttatgaagtgaatgaccaatgattgtgctaaaatgtttgta |
28762681 |
T |
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| Q |
311 |
cagtgcacaattttttcaatacagaa-agggtctaagtccaaacaaaaagagaaattgcaccgaaactaatagaggagtagaaactcgtctactatcaga |
409 |
Q |
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| T |
28762680 |
cagttcatggtgttttgggtacaaaagagggtctaagtccaaacaaaaagagaaattacatcgaatctaatagaggagtaggaactcgacgaatatcaga |
28762581 |
T |
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| Q |
410 |
attgagcaactggaccaactgagtcagacacaactcataaacaatcaaagcatca |
464 |
Q |
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|||||| ||||||||||| |||||| |||||||||| ||||| ||||||||||| |
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| T |
28762580 |
attgagaaactggaccaattgagtcggacacaactc--aaacagtcaaagcatca |
28762528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 307
Target Start/End: Original strand, 19376488 - 19376569
Alignment:
| Q |
226 |
cttaaaatagttgtgattcattagaattatgtttgctttcat--atttgcgaagtgcatgaccaatgattgtgctaaaatgttt |
307 |
Q |
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| T |
19376488 |
cttaacattgttgtgctttattggaattatgtttggtttcatcaatgtgcga--tgcatgaccaatgattgtgctataatgttt |
19376569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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