View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4917-Insertion-2 (Length: 971)
Name: NF4917-Insertion-2
Description: NF4917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4917-Insertion-2 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 220 - 508
Target Start/End: Original strand, 26316349 - 26316623
Alignment:
| Q |
220 |
accactcataacaatggtgatcatttaccataccatgcaactgcgacacatcctcctctacacactgcacattattgtctcttt-aagtatcaaaatatt |
318 |
Q |
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| T |
26316349 |
accactcataacaatggtgatcatttaccataccatgcaactgcgacacatcctcctctacacactgcccattattgtctcttttaagtatcaaaatatt |
26316448 |
T |
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| Q |
319 |
actcttccttctacggtaaacatttttgagatggtaatatatcttgtagtgagatgtggattacgttgaataggattcaaaggaaactaaaatcagttcc |
418 |
Q |
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| T |
26316449 |
actcttccttctacggtaaacatttttttg---------------gtagtgagatgtggattacgttgaataggattcaaaggaaactaaaatcagttcc |
26316533 |
T |
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| Q |
419 |
tattatttctccattcatttttattgctattgaccttcacttagttacttctttgaatcattccactaatacctatctatgaggatccac |
508 |
Q |
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| T |
26316534 |
tattatttctccattcatttttattgctattgaccttcacttagttgcttctttgaatcattccactaatacctatctatgaggatccac |
26316623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 751 - 971
Target Start/End: Original strand, 26316889 - 26317110
Alignment:
| Q |
751 |
taactcttgatcattcaacaactttgtatgtgtacaaaatcttaaggtaagtcatattgtcgtccctttttccattctcttgttcatattctagtattaa |
850 |
Q |
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| T |
26316889 |
taactcttgatcattcaacaactttgcatgtgtacaaaatcttaaggtaagtcatattgtcgtccctttttccattctcttgttcatattctagtattaa |
26316988 |
T |
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| Q |
851 |
gtccttttctcctttgaagatttggccttgtctggaagtgctattatcaacctctccaattgtatttctttattcgcgtagcacttc-aagacttgctcg |
949 |
Q |
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| T |
26316989 |
gtccttttctcctttgaagatttggccttgtctggaagtgctattatcaacctctccaattgtatttctttattcgcgtagcacttcaaagacttgctcg |
26317088 |
T |
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| Q |
950 |
tgcatttggtcagaatcaatct |
971 |
Q |
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| T |
26317089 |
tgcatttggtcagaatcaatct |
26317110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 533 - 754
Target Start/End: Original strand, 26316625 - 26316848
Alignment:
| Q |
533 |
tgcctaattgattttcctctcctttcttatacttggaaagtagttcttgtttccttttgacccaaatcaagtgcatgatctctctatctctttatctttc |
632 |
Q |
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| T |
26316625 |
tgcctaaatgattttcctctcctttcttatacgtggaaagtaattcttgtttccttttgacccaaatcaagtgcatgatctctctatctctttatctttc |
26316724 |
T |
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| Q |
633 |
acggtgatactactacactcccatatttagtggcctcttgatgaattcatttgagtacaataaaaccctt----cttactgctcaagccatttcatcgta |
728 |
Q |
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| T |
26316725 |
acggtgatactact--actcccatatttagtggcctcttgatgaattcatttgagtacaataaaaccctttttacttactgctcaagccatttcatcgta |
26316822 |
T |
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| Q |
729 |
agttaaagagacaataattttctaac |
754 |
Q |
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| T |
26316823 |
aggtcaagagacaataattttctaac |
26316848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 122 - 220
Target Start/End: Original strand, 26311416 - 26311515
Alignment:
| Q |
122 |
gtagaacaaggattactacaaacccttcaaacaaaatcgcacatgctctagcaccccaata-nnnnnnnggaaaagtagcataaatagtctcagttgaga |
220 |
Q |
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| T |
26311416 |
gtagaactaggattactacaaacccttcaaacaaaatcgcacatgctctagcaccccaatattttttttggaaaagtagcataaatagtctcagttgaga |
26311515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 26311302 - 26311380
Alignment:
| Q |
8 |
taatgaccaaacaaattgaaatggtgagtgaaaatgtttaaaac----atataataattgtgtattttttcagttttgt |
82 |
Q |
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| T |
26311302 |
taatgaccaaacaaattgaaatggtgagtgaaaatgtttaaaacatatatataataattgtctattttttcagttttgt |
26311380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 1e-46; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 751 - 971
Target Start/End: Original strand, 27026356 - 27026578
Alignment:
| Q |
751 |
taactcttgatcattcaacaactttgtatgtgtacaaaatcttaaggtaag-tcatattgtcgtccctttttccattctcttgttcatattctagtatta |
849 |
Q |
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| T |
27026356 |
taactctttctcgttcaataacttcgtatgtgtacaaaatcttaaggtaaggtcatggggttgtccctttt-ccattctcttgttcatattttattatta |
27026454 |
T |
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| Q |
850 |
agtccttttctcctttgaagatttggccttgtctggaagtgctattatcaacctctccaattgtatttctttattcgcgtagcacttc-aagac-ttgct |
947 |
Q |
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| T |
27026455 |
agtccttttctcatttgaagatttggctttgtctgaaagtattgttaccaacatctccaattgtatttctatattcgtgtagtacttcaaagactttgct |
27026554 |
T |
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| Q |
948 |
cgtgcatttggtcagaatcaatct |
971 |
Q |
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| T |
27026555 |
cgtgcgtttggtcggaatcaatct |
27026578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 459 - 722
Target Start/End: Original strand, 27026007 - 27026282
Alignment:
| Q |
459 |
ttagttacttctttgaatcattccactaa-tacctatctatgaggatccacttgcaattggttttgagagatgtttgcctaattgattttcctctccttt |
557 |
Q |
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| T |
27026007 |
ttagttacttctttgaataattccaccaaatacctatctatgaggatc-acgtgcaattagttttaagagaaacatgcctaattgtttttcctctcgttt |
27026105 |
T |
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| Q |
558 |
cttata---------cttggaaa-gtagttcttgtttccttttgacccaaatcaagtgcatgatctctc----tatctctttatctttcacggtgatact |
643 |
Q |
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| T |
27026106 |
cttataactcggctacgtggaaaagttgttcatgatttcttttgacccaaatcaagtgcatgatctctctatgtatcgctttatcttttacggtgatact |
27026205 |
T |
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| Q |
644 |
actacactcccatatttagtggcctcttgatgaattcatttgagtacaataaaacccttcttactgctcaagccatttc |
722 |
Q |
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| T |
27026206 |
tctactctcc--tatttagtgatctcttgatgaagtcatttgagcacaatataactcttcttactgctcaggctatttc |
27026282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 14319730 - 14319802
Alignment:
| Q |
13 |
accaaacaaattgaaatggtgagtgaaaatgtttaaaacatataataattgtgtattttttcagttttgttta |
85 |
Q |
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| T |
14319730 |
accaaacaagttgaaatggtgagggaaaatgtttaaagcatataacaattgtttatttttataattttgttta |
14319802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 819 - 896
Target Start/End: Original strand, 42860948 - 42861025
Alignment:
| Q |
819 |
tttccattctcttgttcatattctagtattaagtccttttctcctttgaagatttggccttgtctggaagtgctatta |
896 |
Q |
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| T |
42860948 |
tttccattcttttgttcgtattctaatattaagtcccattttcttttgaagagctggccttgtctcaaagtactatta |
42861025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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