View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4917-Insertion-5 (Length: 317)
Name: NF4917-Insertion-5
Description: NF4917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4917-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 124 - 316
Target Start/End: Complemental strand, 374748 - 374554
Alignment:
| Q |
124 |
tttctcaaaatcctatctgggtttttggannnnnnnnagcggtaatgttcttcattctaatggattttaattttactatgattgaatagaaaaacnnnnn |
223 |
Q |
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| T |
374748 |
tttctcaaaatcctatctgggtttttggattttttttagcggtaatgttcttcattctaatgtattttaattttactatgattgaatagaaaaaactaat |
374649 |
T |
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| Q |
224 |
nnnnnnn--gtcaaaaacccatctgggtttgaaattttttgagggggtaatgttattcattctattgggttttaatttttcatataaaaatttat |
316 |
Q |
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| T |
374648 |
tttttttttgtcaaaaacccatctgggtttgaaattttttgagggggtaatgttattcattctattgggttttaatttttcatataaaaatttat |
374554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 374873 - 374785
Alignment:
| Q |
8 |
aatgttactcattctatttggttctagtttttcatnnnnnnnnttaatttttcttgaatgaattatatgttttttgtatttcatttgtc |
96 |
Q |
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| T |
374873 |
aatgttactcattctatttggttctagtttttcataaaaaaaattaatttttcttgattgaattatatgttttttgtatttcatttgtc |
374785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 385255 - 385191
Alignment:
| Q |
241 |
catctgggtttgaaattttttgagggggtaatgttattcattctattgggttttaatttttcatat |
306 |
Q |
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| T |
385255 |
catctaggtttgagattttttgaggggc-aacgttattcattctgttagtttttaatttttcatat |
385191 |
T |
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