View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4917-Insertion-6 (Length: 269)
Name: NF4917-Insertion-6
Description: NF4917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4917-Insertion-6 |
 | |
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| [»] chr5 (19 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 19)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 269
Target Start/End: Original strand, 10217455 - 10217713
Alignment:
| Q |
8 |
ggtacctcgccttccaacaggttaaaagaaacattcaagtgttttaaaccaaatatattctgtataacatttggaattgatccataaaattgatttctag |
107 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| | |
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|
| T |
10217455 |
ggtacctccccttccaacatgttaaaagaaacattcaagtgttttaaaccagagatattctgtatgacatttggaattgatccataaaattgatttctgg |
10217554 |
T |
|
| Q |
108 |
aaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttcccttgcaagagaaggtattccaagcttacgca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
10217555 |
aaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtattgttccattgaaggagttcccttgcaaatgaaggtattccaagcttacgca |
10217654 |
T |
|
| Q |
208 |
ttcaccaatagtgataggaatatcaccaaacagattattttcagaaacatctagcttaccaa |
269 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10217655 |
ttcaccaa---tgataggaatatcaccaaacagattattttcagaaacatctagcttaccaa |
10217713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 209
Target Start/End: Original strand, 11049363 - 11049564
Alignment:
| Q |
8 |
ggtacctcgccttccaacaggttaaaagaaacattcaagtgttttaaaccaaatatattctgtataacatttggaattgatccataaaattgatttctag |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11049363 |
ggtacctcgccttccaacaggttaaaagaaacattcaagtgttttaaaccaaagatattctgtataacatttggaattgatccataaaattgatttctag |
11049462 |
T |
|
| Q |
108 |
aaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttcccttgcaagagaaggtattccaagcttacgca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11049463 |
aaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttcccttgcaagagaaggtattcgaagcttacgca |
11049562 |
T |
|
| Q |
208 |
tt |
209 |
Q |
| |
|
|| |
|
|
| T |
11049563 |
tt |
11049564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 11 - 215
Target Start/End: Complemental strand, 10611210 - 10611006
Alignment:
| Q |
11 |
acctcgccttccaacaggttaaaagaaacattcaagtgttttaaaccaaatatattctgtataacatttggaattgatccataaaattgatttctagaaa |
110 |
Q |
| |
|
||||| ||||||| || ||||||||||||||||||||||| ||||| | |||| ||| ||||||| |||||||||||| | ||||||||| | |||| |
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|
| T |
10611210 |
acctcaccttccagcatgttaaaagaaacattcaagtgttctaaacatgagatatcctgcataacatcaggaattgatccagacaattgatttgttgaaa |
10611111 |
T |
|
| Q |
111 |
ggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttcccttgcaagagaaggtattccaagcttacgcattc |
210 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| || |||| ||||| |
|
|
| T |
10611110 |
ggtctaaatatcgaagacctttgagagaagccaaagaggaaggtattgttccattgaaggagttaccttgcaaaagaaggtattctaaacttatacattc |
10611011 |
T |
|
| Q |
211 |
accaa |
215 |
Q |
| |
|
||||| |
|
|
| T |
10611010 |
accaa |
10611006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 10747721 - 10747975
Alignment:
| Q |
8 |
ggtacctcgccttccaacaggttaaaagaaacattcaagtgttttaaaccaaatatattctgtataacatttggaattgatccataaaattgatttctag |
107 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||| | || |||| || | ||||| || ||||||| |||||||| ||| | ||| ||||||| | |
|
|
| T |
10747721 |
ggtacctcaccttccaacatgttaaaagaaacattcaaatattctaaaacagagatattttgcataacatcaggaattgacccagacaatcgatttcttg |
10747820 |
T |
|
| Q |
108 |
aaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttcccttgcaagagaaggtattccaagcttacgca |
207 |
Q |
| |
|
|||||||||||| | |||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||| ||| | ||| |
|
|
| T |
10747821 |
aaaggtctaaatgttgaagaccttcgagagaagccaaagaggatggtattgttccattgaaggagttcccttgcaggtgaaggtattctaaggctgtgca |
10747920 |
T |
|
| Q |
208 |
ttcaccaatagtgataggaatatcaccaaacagattattttcagaaacatctagc |
262 |
Q |
| |
|
|||||||| || |||||||||||||| | |||| ||| ||||| ||||||||| |
|
|
| T |
10747921 |
atcaccaattgttgtaggaatatcaccagatagatgattctcagagacatctagc |
10747975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 10604252 - 10604003
Alignment:
| Q |
11 |
acctcgccttccaacaggttaaaagaaacattcaagtgttttaaaccaaatatattctgtataacatttggaattgatccataaaattgatttctagaaa |
110 |
Q |
| |
|
||||| |||||||||| |||||| |||||||||||||||| ||| | | | |||||||| | ||||| ||||||| |||||| ||||||||||| |||| |
|
|
| T |
10604252 |
acctcaccttccaacatgttaaaggaaacattcaagtgttctaagctagagatattctgcaaaacatcaggaattggtccatacaattgatttcttgaaa |
10604153 |
T |
|
| Q |
111 |
ggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttcccttgcaagagaaggtattccaagcttacgcattc |
210 |
Q |
| |
|
||||||||| ||||||||||| ||||| |||||||| ||||||||||| ||||| |||||||||||||| |||||||||| ||||||| |||||| |
|
|
| T |
10604152 |
tatctaaatattgtagacctttgagagaagcaaaagaggatggtattgttccgttgaatgagttcccttgcaaacgaaggtattctaagcttatgcattc |
10604053 |
T |
|
| Q |
211 |
accaatagtgataggaatatcaccaaacagattattttcagaaacatcta |
260 |
Q |
| |
|
||||||||| |||||| || ||| ||| || ||||||||| ||||||| |
|
|
| T |
10604052 |
accaatagttccaggaatctccccacacaaatgattttcagagacatcta |
10604003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 10717646 - 10717854
Alignment:
| Q |
8 |
ggtacctcgccttccaacaggttaaaagaaacattcaagtgttttaaaccaaatatattctgtataacatttggaattgatccataaaattgatttctag |
107 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||| ||||||| | || ||||| ||||||| ||||||| ||| || ||||||||||| | |
|
|
| T |
10717646 |
ggtacctcaccttccaacatgttaaaagaaacattcaagtgttctaaaccatagattttctgcataacatcaggaattggtccgtacaattgatttcttg |
10717745 |
T |
|
| Q |
108 |
aaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttcccttgcaagagaaggtattccaagcttacgca |
207 |
Q |
| |
|
|||||||||||||| | | | ||||| |||||||||||||| |||||||||||||||| ||||||||||| ||| |||| ||||||||||| | ||| |
|
|
| T |
10717746 |
aaaggtctaaatatcttaaagccttgagagaagccaaagaggatggtattgttccattgatggagttcccttccaaatgaagatattccaagctcatgca |
10717845 |
T |
|
| Q |
208 |
ttcaccaat |
216 |
Q |
| |
|
||||||||| |
|
|
| T |
10717846 |
ttcaccaat |
10717854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 10763839 - 10764083
Alignment:
| Q |
8 |
ggtacctcgccttccaacaggttaaaagaaacattcaagtgttttaaaccaaatatattctgtataacatttggaattgatccataaaattgatttctag |
107 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||| | || | || || ||||||| || ||||||| |||||||||||| | ||||||||||| | |
|
|
| T |
10763839 |
ggtacttcgccttccaacatgttaaaagaaacattcaaatattcttaaacagatatattttgcataacatcaggaattgatccagacaattgatttcttg |
10763938 |
T |
|
| Q |
108 |
aaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttcccttgcaagagaaggtattccaagcttacgca |
207 |
Q |
| |
|
||||||||||| | |||||||||||| ||||||| |||||| ||||||||||| ||||||||||||||||||| |||||||||| ||| || ||| |
|
|
| T |
10763939 |
aaaggtctaaactttgaagacctttgagagaagccatagaggatggtattgttccgctgaaggagttcccttgcaattgaaggtattctaaggttgtgca |
10764038 |
T |
|
| Q |
208 |
ttcaccaatagtgataggaatatcaccaaacagattattttcaga |
252 |
Q |
| |
|
||||||||| || |||||||||||||| | |||| ||| ||||| |
|
|
| T |
10764039 |
ttcaccaattgttttaggaatatcaccagatagatgattctcaga |
10764083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 10741405 - 10741632
Alignment:
| Q |
8 |
ggtacctcgccttccaacaggttaaaagaaacattcaagtgttttaaaccaaatatattctgtataacatttggaattgatccataaaattgatttctag |
107 |
Q |
| |
|
|||||||| |||||||| | |||||||||||||||||||| || |||||| | ||| ||| ||||||| |||||||||||| | ||||||||||| | |
|
|
| T |
10741405 |
ggtacctctccttccaataagttaaaagaaacattcaagtattccaaaccagagatactcttcataacatcaggaattgatccagacaattgatttcttg |
10741504 |
T |
|
| Q |
108 |
aaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttcccttgcaagagaaggtattccaagcttacgca |
207 |
Q |
| |
|
||||||||||| | |||||||||||| ||||||| |||||| ||||||||||| ||||||||||||||||||| |||||||||| ||| || ||| |
|
|
| T |
10741505 |
aaaggtctaaactttgaagacctttgagagaagccatagaggatggtattgttccgctgaaggagttcccttgcaattgaaggtattctaaggttgtgca |
10741604 |
T |
|
| Q |
208 |
ttcaccaatagtgataggaatatcacca |
235 |
Q |
| |
|
||||||||| || |||||||||||||| |
|
|
| T |
10741605 |
ttcaccaattgttctaggaatatcacca |
10741632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 8 - 216
Target Start/End: Complemental strand, 10564530 - 10564322
Alignment:
| Q |
8 |
ggtacctcgccttccaacaggttaaaagaaacattcaagtgttttaaaccaaatatattctgtataacatttggaattgatccataaaattgatttctag |
107 |
Q |
| |
|
||||| || |||||||||| |||||||||||||||||| | || |||| || | ||||| || ||||||| |||||||||||| | ||||||||||| | |
|
|
| T |
10564530 |
ggtacatctccttccaacatgttaaaagaaacattcaaatattctaaaacagagatattttgcataacatcaggaattgatccagacaattgatttcttg |
10564431 |
T |
|
| Q |
108 |
aaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttcccttgcaagagaaggtattccaagcttacgca |
207 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||| ||||||||||||||||| ||||||| |||||||||||| | ||| ||||| ||||||| || |
|
|
| T |
10564430 |
aaaggtctaaatatcgaagacctttgagagaagccatagaggacggtattgttctgttgaaggcgttcccttgcaacataagatattctaagcttataca |
10564331 |
T |
|
| Q |
208 |
ttcaccaat |
216 |
Q |
| |
|
||| ||||| |
|
|
| T |
10564330 |
ttcgccaat |
10564322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 264
Target Start/End: Complemental strand, 7192508 - 7192252
Alignment:
| Q |
8 |
ggtacctcgccttccaacaggttaaaagaaacattcaagtgttttaaaccaaatatattctgtataacatttggaattgatccataaaattgatttctag |
107 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||| |||| | |||||||||||| |||||| ||||||| |||||| || ||||||| | |
|
|
| T |
7192508 |
ggtacctcgccttccaacatgttgaaagaaacattcaagtgttctaaaactgatatattctgtagaacattaggaattggtccatacaaccgatttcttg |
7192409 |
T |
|
| Q |
108 |
aaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttcccttgcaagagaaggtattccaagcttacgca |
207 |
Q |
| |
|
| |||||||||||| ||||| ||| | |||||||| ||||| ||||| ||||| ||||||||||| |||||||| | |||||||| |||| || ||| |
|
|
| T |
7192408 |
acaggtctaaatattgaagacttttaactgaagccaatgaggatggtatggttccgttgaaggagtttccttgcaaaaagaggtattctaagcgtatgca |
7192309 |
T |
|
| Q |
208 |
ttcaccaatagtgataggaatatcaccaaacagattattttcagaaacatctagctt |
264 |
Q |
| |
|
||| ||||| | ||||||| |||||| | ||| ||| || || ||||||||||| |
|
|
| T |
7192308 |
ttcgccaatggctctaggaatgtcaccagatagaagattctccgagacatctagctt |
7192252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 10660791 - 10660966
Alignment:
| Q |
8 |
ggtacctcgccttccaacaggttaaaagaaacattcaagtgttttaaaccaaatatattctgtataacatttggaattgatccataaaattgatttctag |
107 |
Q |
| |
|
||||||||||||||||||| ||| ||||| |||||||||||||||||| | |||||||||||| |||||||||||| | |||| | ||| |||||| | |
|
|
| T |
10660791 |
ggtacctcgccttccaacatgttgaaagatacattcaagtgttttaaaactgatatattctgtagaacatttggaatcggtccagacaatcgatttcctg |
10660890 |
T |
|
| Q |
108 |
aaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttcccttgcaa |
183 |
Q |
| |
|
| | ||||| |||| ||||||||| || |||||||| ||||| ||||| ||||| ||||| |||||||||||||| |
|
|
| T |
10660891 |
acaagtctagatattgaagacctttaagtgaagccaatgaggatggtatggttccgttgaaagagttcccttgcaa |
10660966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 10652905 - 10653131
Alignment:
| Q |
8 |
ggtacctcgccttccaacaggttaaaagaaacattcaagtgttttaaaccaaatatattctgtataacatttggaattgatccataaaattgatttctag |
107 |
Q |
| |
|
||||| || |||||||||| ||| ||||||||||||||||||| |||| | ||||| | |||| |||||||||||||| |||||| || ||||||| | |
|
|
| T |
10652905 |
ggtacttctccttccaacatgttgaaagaaacattcaagtgttctaaaactgatatactttgtagaacatttggaattggtccatacaaccgatttcttg |
10653004 |
T |
|
| Q |
108 |
aaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttcccttgcaagagaaggtattccaagcttacgca |
207 |
Q |
| |
|
| | |||||||||| ||||||||| || |||||||| | ||| || || ||||| ||||| |||||||||||||| ||||||||| ||| || ||| |
|
|
| T |
10653005 |
acaagtctaaatattgaagacctttaagtgaagccaatgtggatggaatggttccgttgaacgagttcccttgcaaagaaaggtattctaagactatgca |
10653104 |
T |
|
| Q |
208 |
ttcaccaatagtgataggaatatcacc |
234 |
Q |
| |
|
||||||||| || ||||||| ||||| |
|
|
| T |
10653105 |
ttcaccaatggttctaggaatctcacc |
10653131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 41 - 216
Target Start/End: Complemental strand, 10601325 - 10601150
Alignment:
| Q |
41 |
ttcaagtgttttaaaccaaatatattctgtataacatttggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaag |
140 |
Q |
| |
|
||||||| || ||||||| ||||||||| |||||| ||||||| |||||| ||||||||||| |||| ||||||||| ||||||||||| | || |
|
|
| T |
10601325 |
ttcaagtattctaaaccagatatattctccataacaccaggaattggtccatacaattgatttcttgaaatatctaaatattgtagacctttgagagcag |
10601226 |
T |
|
| Q |
141 |
ccaaagaggacggtattgttccattgaaggagttcccttgcaagagaaggtattccaagcttacgcattcaccaat |
216 |
Q |
| |
|
|||||||||| ||||||||||| ||||| || ||| ||||||| |||||||||| |||||||| |||||||||| |
|
|
| T |
10601225 |
ccaaagaggatggtattgttccgttgaaagaattctcttgcaaatgaaggtattctaagcttacatattcaccaat |
10601150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 80 - 265
Target Start/End: Original strand, 9837106 - 9837291
Alignment:
| Q |
80 |
ggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaag-gagttccct |
178 |
Q |
| |
|
|||||||||||| | || ||||||||||| | |||||||||| |||| ||||||| || ||||||| ||| ||||| ||||| | |||| |||||||| |
|
|
| T |
9837106 |
ggaattgatccagacaactgatttctagacatgtctaaatattgaagaactttgagagatgccaaagtggaaggtatggttccgt-gaagagagttcccc |
9837204 |
T |
|
| Q |
179 |
tgcaagagaaggtattccaagcttacgcattcaccaatagtgataggaatatcaccaaacagattattttcagaaacatctagctta |
265 |
Q |
| |
|
|| ||| |||||||||| || |||| |||||||||||| || || ||||| ||||| |||||| ||||||||| |||||||||||| |
|
|
| T |
9837205 |
tgtaagtgaaggtattctaaacttatgcattcaccaattgttattggaatgtcacccgacagatgattttcagagacatctagctta |
9837291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 10558420 - 10558166
Alignment:
| Q |
11 |
acctcgccttccaacaggttaaaagaaacattcaagtgttttaaaccaaatatattctgtataacatttggaattgatccataaaattgatttctagaaa |
110 |
Q |
| |
|
||||| || ||||||| |||||| ||||| |||||||||| ||||| | | ||||| || | || || |||||||||||| | ||||||||||| || | |
|
|
| T |
10558420 |
acctctccatccaacatgttaaatgaaacgttcaagtgttctaaacgagaaatattttgcagaatgttaggaattgatccagacaattgatttcttgaca |
10558321 |
T |
|
| Q |
111 |
ggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttcccttgcaagagaaggtattccaagcttacgcattc |
210 |
Q |
| |
|
|||||||||| ||||||| | | ||||||||||||| ||||| || || |||||| || |||||||| | ||||||||| |||||| ||||| |
|
|
| T |
10558320 |
tgtctaaatatcgaagacctcttatataagccaaagaggaaggtatgatttgatggaaggaatttccttgcaaaaaaaggtattctaagcttttgcattg |
10558221 |
T |
|
| Q |
211 |
accaatagtgataggaatatcaccaaacagattattttcagaaacatctagctta |
265 |
Q |
| |
|
| |||| || |||||||| |||||| ||| |||||| ||||| | |||||||||| |
|
|
| T |
10558220 |
atcaatggttataggaatttcaccagacaaattattctcagagaaatctagctta |
10558166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 19606574 - 19606779
Alignment:
| Q |
11 |
acctcgccttccaacaggttaaaagaaacattcaagtgttttaaaccaaatatattctgtataacatttggaattgatccataaaattgatttctagaaa |
110 |
Q |
| |
|
||||| || ||||||| |||||||||||||||||||| || |||| || | ||||| || | |||| | |||||||||||| || ||||||| || | |
|
|
| T |
19606574 |
acctctccatccaacatgttaaaagaaacattcaagtattctaaaacagaaatattttgcagaacactaggaattgatccagtcaaccgatttcttgata |
19606673 |
T |
|
| Q |
111 |
ggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttcccttgcaagagaaggtattccaagcttacgcattc |
210 |
Q |
| |
|
||||||||||| ||||||| | || ||||| |||||||| ||||| |||| | |||||||||||||| || ||| ||||| ||||||| |||||| |
|
|
| T |
19606674 |
ggtctaaatatcgaagacctctaagagaagctaaagaggatggtatgattccgtgaaaggagttcccttgaaaataaagatattctaagcttatgcattc |
19606773 |
T |
|
| Q |
211 |
accaat |
216 |
Q |
| |
|
|||||| |
|
|
| T |
19606774 |
accaat |
19606779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 10580494 - 10580340
Alignment:
| Q |
8 |
ggtacctcgccttccaacaggttaaaagaaacattcaagtgttttaaaccaaatatattctgtataacatttggaattgatccataaaattgatttctag |
107 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||| |||| || |||| | | ||||| || ||||||| ||| ||| |||| | |||| |||||| | |
|
|
| T |
10580494 |
ggtacctcaccttccaacatgttaaaagaaacatctaagtattctaaattagagatattttgcataacatcgggatttggtccaaacaatttatttcttg |
10580395 |
T |
|
| Q |
108 |
aaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttcc |
162 |
Q |
| |
|
||| |||||||| ||||||||||| ||||| |||||||| ||| ||||||| |
|
|
| T |
10580394 |
aaatatctaaataccgtagacctttgagagaagcaaaagaggatggtcttgttcc |
10580340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 10550227 - 10550094
Alignment:
| Q |
77 |
tttggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttcc |
176 |
Q |
| |
|
|||||||||||||| | ||||| ||||| || |||||||| | |||||||||||| || |||||||||| ||||| |||||||||| || |||| |
|
|
| T |
10550227 |
tttggaattgatccggataattggtttcttgagaggtctaacactcgaagacctttgagagattccaaagaggatggtatgcttccattgaatgaattcc |
10550128 |
T |
|
| Q |
177 |
cttgcaagagaaggtattccaagcttacgcattc |
210 |
Q |
| |
|
|| ||| | ||||||||| ||||||| |||||| |
|
|
| T |
10550127 |
ctgtcaaaataaggtattctaagcttaagcattc |
10550094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 162
Target Start/End: Original strand, 10589205 - 10589287
Alignment:
| Q |
80 |
ggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttcc |
162 |
Q |
| |
|
|||||||||||| | || |||||||| || | |||||||||| |||||||||||| || ||||||| | | ||||||||||| |
|
|
| T |
10589205 |
ggaattgatccagacaactgatttcttgacatgtctaaatattgaagacctttgagagatgccaaagtgaaaggtattgttcc |
10589287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 6e-43; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 12931782 - 12931530
Alignment:
| Q |
8 |
ggtacctcgccttccaacaggttaaaagaaacattcaagtgttttaaaccaaatatattctgtataacatttggaattgatccataaaattgatttctag |
107 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||| | || |||| || | ||||| || ||| ||| |||||||||||| | ||||||||||| | |
|
|
| T |
12931782 |
ggtacctctccttccaacatgttaaaagaaacattcaaatattctaaaacagagatattttgcataccatcaggaattgatccagacaattgatttcttg |
12931683 |
T |
|
| Q |
108 |
aaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttcccttgcaagagaaggtattccaagcttacgca |
207 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| ||||||||||||||||||||| ||||||||||||| |||||| ||| ||||| |||||| || |
|
|
| T |
12931682 |
aaaggtctaaatatcgaagacctttgagaaaagtcaaagaggacggtattgttccgttgaaggagttcctttgcaaatgaatatattctaagcttgtaca |
12931583 |
T |
|
| Q |
208 |
ttcaccaatagtgataggaatatcaccaaacagattattttcagaaacatcta |
260 |
Q |
| |
|
||||||||| |||||||||||||| | |||| ||| ||||| ||||||| |
|
|
| T |
12931582 |
ttcaccaatttctctaggaatatcaccagatagatgattctcagagacatcta |
12931530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 12948147 - 12947895
Alignment:
| Q |
8 |
ggtacctcgccttccaacaggttaaaagaaacattcaagtgttttaaaccaaatatattctgtataacatttggaattgatccataaaattgatttctag |
107 |
Q |
| |
|
|||| ||| ||| |||||| |||||||||||||||||| | | |||| || | ||||| || ||| ||| |||||||||||| | ||||||||||| | |
|
|
| T |
12948147 |
ggtatctctcctaccaacatgttaaaagaaacattcaaatactctaaaacagagatattttgcataccatcaggaattgatccagacaattgatttcttg |
12948048 |
T |
|
| Q |
108 |
aaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttcccttgcaagagaaggtattccaagcttacgca |
207 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| ||||||||||||||||||||| ||||||||||||| |||||| ||| ||||| |||||| || |
|
|
| T |
12948047 |
aaaggtctaaatatcgaagacctttgagaaaagtcaaagaggacggtattgttccgttgaaggagttcctttgcaaatgaatatattctaagcttgtaca |
12947948 |
T |
|
| Q |
208 |
ttcaccaatagtgataggaatatcaccaaacagattattttcagaaacatcta |
260 |
Q |
| |
|
||||||||| |||||||||||||| | |||| ||| ||||| ||||||| |
|
|
| T |
12947947 |
ttcaccaatttctctaggaatatcaccagatagatgattctcagagacatcta |
12947895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 183
Target Start/End: Complemental strand, 12957581 - 12957406
Alignment:
| Q |
8 |
ggtacctcgccttccaacaggttaaaagaaacattcaagtgttttaaaccaaatatattctgtataacatttggaattgatccataaaattgatttctag |
107 |
Q |
| |
|
|||||||| |||||||| | |||||||||||||||||| | || |||| || | ||||| || ||| ||| |||||||||||| | ||||||||||| | |
|
|
| T |
12957581 |
ggtacctctccttccaatatgttaaaagaaacattcaaatattctaaaacagagatattttgcataccatcaggaattgatccagacaattgatttcttg |
12957482 |
T |
|
| Q |
108 |
aaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttcccttgcaa |
183 |
Q |
| |
|
||| |||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
12957481 |
aaacgtctaaatattgaagacctttgagagaagctaaagaggacggtattgttccattgaagatgttcctttgcaa |
12957406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 216
Target Start/End: Complemental strand, 12906693 - 12906485
Alignment:
| Q |
8 |
ggtacctcgccttccaacaggttaaaagaaacattcaagtgttttaaaccaaatatattctgtataacatttggaattgatccataaaattgatttctag |
107 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||| || | || ||| | ||||| || ||| ||| |||||||||||| | ||||||||||| | |
|
|
| T |
12906693 |
ggtacctctccttccaacatgttaaaagaaacattaaaatattccaaaaatgagatattttgcataccatcaggaattgatccagacaattgatttcttg |
12906594 |
T |
|
| Q |
108 |
aaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttcccttgcaagagaaggtattccaagcttacgca |
207 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||||||||| || |||||||||| |||||| ||| ||||| |||||| || |
|
|
| T |
12906593 |
aaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttccgttaaaggagttcctttgcaaatgaatatattctaagcttgtaca |
12906494 |
T |
|
| Q |
208 |
ttcaccaat |
216 |
Q |
| |
|
||||||||| |
|
|
| T |
12906493 |
ttcaccaat |
12906485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 216
Target Start/End: Complemental strand, 12899073 - 12898865
Alignment:
| Q |
8 |
ggtacctcgccttccaacaggttaaaagaaacattcaagtgttttaaaccaaatatattctgtataacatttggaattgatccataaaattgatttctag |
107 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||| || | || ||| | ||||| || ||| ||| |||||||||||| | ||||||||||| | |
|
|
| T |
12899073 |
ggtacctctccttccaacatgttaaaagaaacattaaaatattccaaaaatgagatattttgcataccatcaggaattgatccagacaattgatttcttg |
12898974 |
T |
|
| Q |
108 |
aaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttcccttgcaagagaaggtattccaagcttacgca |
207 |
Q |
| |
|
||| |||||||||| ||||||||| || |||||||||||||||||||||||||| ||||||||||||| |||||| |||| ||||| | |||| || |
|
|
| T |
12898973 |
aaaagtctaaatattgaagacctttaagagaagccaaagaggacggtattgttccgttgaaggagttcctttgcaaaagaatatattctatgcttgtaca |
12898874 |
T |
|
| Q |
208 |
ttcaccaat |
216 |
Q |
| |
|
||||||||| |
|
|
| T |
12898873 |
ttcaccaat |
12898865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 17924109 - 17924317
Alignment:
| Q |
8 |
ggtacctcgccttccaacaggttaaaagaaacattcaagtgttttaaaccaaatatattctgtataacatttggaattgatccataaaattgatttctag |
107 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||| | || ||| | ||||| || ||| ||| |||||||||||| | ||||||||||| | |
|
|
| T |
17924109 |
ggtacctctccttccaacatgttaaaagaaacattcaaatattccaaaaatgagatattttgcataccatcaggaattgatccagacaattgatttcttg |
17924208 |
T |
|
| Q |
108 |
aaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttcccttgcaagagaaggtattccaagcttacgca |
207 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||| ||| ||||| ||||||| || |
|
|
| T |
17924209 |
aaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttccgttgaaggagttcctttgcaaatgaatatattctaagcttataca |
17924308 |
T |
|
| Q |
208 |
ttcaccaat |
216 |
Q |
| |
|
||||||||| |
|
|
| T |
17924309 |
ttcaccaat |
17924317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 254
Target Start/End: Original strand, 31467868 - 31468114
Alignment:
| Q |
8 |
ggtacctcgccttccaacaggttaaaagaaacattcaagtgttttaaaccaaatatattctgtataacatttggaattgatccataaaattgatttctag |
107 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| |||| || || | | ||||| |||| | | || |||||||||||| | || || |||| | |
|
|
| T |
31467868 |
ggtacctcgccttccaacatgttaaaagatacattgaagtattgtaggaaagaaatattttgtagacctttaggaattgatccagacaagtggtttcgtg |
31467967 |
T |
|
| Q |
108 |
aaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttcccttgcaagagaaggtattccaagcttacgca |
207 |
Q |
| |
|
| |||||||||| | ||| ||||| || ||||| | ||||| ||||| ||||| |||||| || |||||||| |||||| |||||||||||||| |
|
|
| T |
31467968 |
ataggtctaaatgttgaaggcctttcagtgaagctagagaggttggtatgactccatggaaggaatttccttgcaaataaaggtactccaagcttacgca |
31468067 |
T |
|
| Q |
208 |
ttcaccaatagtgataggaatatcaccaaacagattattttcagaaa |
254 |
Q |
| |
|
||| ||||| || |||||||||||||| | |||||||| ||||||| |
|
|
| T |
31468068 |
ttccccaatcgttctaggaatatcaccagatagattattctcagaaa |
31468114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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