View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4917-Insertion-7 (Length: 86)
Name: NF4917-Insertion-7
Description: NF4917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4917-Insertion-7 |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 76; Significance: 9e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 9e-36
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 13058747 - 13058830
Alignment:
| Q |
3 |
caacacttgacagacttagagtcgacagtgatctataagaccaccgaataaggttaggatgctaccgaggcttgtatgcaggaa |
86 |
Q |
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| T |
13058747 |
caacccttgacaggcttagagtcgacagtgatctataagaccaccgaataaggttaggatgctaccgaggcttgtatgcaggaa |
13058830 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 10280697 - 10280758
Alignment:
| Q |
17 |
cttagagtcgacagtgatctataagaccaccgaataaggttaggatgctaccgaggcttgta |
78 |
Q |
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| T |
10280697 |
cttagagtcgacagtgatctataagaccaccagagaaggttaggatgctactgagacttgta |
10280758 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 5535928 - 5535997
Alignment:
| Q |
17 |
cttagagtcgacagtgatctataagaccaccgaataaggttaggatgctaccgaggcttgtatgcaggaa |
86 |
Q |
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| T |
5535928 |
cttagattcgacagtgctatataagaccaccagagaaggttaggatgctactgaggcttgtatgccggaa |
5535997 |
T |
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