View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4917_low_2 (Length: 470)
Name: NF4917_low_2
Description: NF4917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4917_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 458
Target Start/End: Complemental strand, 46040622 - 46040177
Alignment:
| Q |
18 |
gaacgaataagtgctgctagttctaacattgttagactgccatcggaatccatgtcgaatcgtctgaagatttctcttagttgattaagttgatcaactt |
117 |
Q |
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| T |
46040622 |
gaacgaataagtgctgctagttctaacattgttagactgccatcggaatccatgtcgaatcgtctgaagatttctcttagttgattaagttgatcaactt |
46040523 |
T |
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| Q |
118 |
taacctttgacatattaattggttagagtatgtagttgacaaaataataaagatagagcaaaattgaaatgaagagttaggaagagaggtgtgacttatt |
217 |
Q |
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| T |
46040522 |
taacctttgacatattaattgtttagagtctgtagttgacaaaataataaagatagagcaaaattgaaatgaaaagtttggaagagaggtgtgacttatt |
46040423 |
T |
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| Q |
218 |
ttggtatgaatgtgatgaatgggatgtgccttttgaaaggtttggaacataaagcgcgtcggtggctatatgatattattatattaagttagggtcactg |
317 |
Q |
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| T |
46040422 |
ttggtatgaatgtgatgaatgggatgtgccttttgaaaggtttggaacataaagcgcgtcggtggctatatgatattattatattaagttagggtcactg |
46040323 |
T |
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| Q |
318 |
ctaatagtcttgtgctttctgggaaactcacgataaatgctggtcttggattcttggtattaatttaatcatggtattgttgtactatccttgtaat--- |
414 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46040322 |
ctagtagtcttgtgctttctgggaaactcacgataaatgctagtcttggattcttggtattaatttaatcatggtattgttgtactatccttgtaatttt |
46040223 |
T |
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| Q |
415 |
--tttaggattaaattagaattttataagggtggtgaattgatgat |
458 |
Q |
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| T |
46040222 |
attttaggattaaattagaattttataagggtggtgaattgatgat |
46040177 |
T |
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