View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4917_low_3 (Length: 259)
Name: NF4917_low_3
Description: NF4917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4917_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 13058756 - 13058525
Alignment:
| Q |
18 |
tcaagggttgtgaagtggcgttgtttcgttagttggtggtatttgcttccagattttccgcctccgagtcagaggttcactattattggtttcggttgtg |
117 |
Q |
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| T |
13058756 |
tcaagggttgtgaagtggctttgtttcgttagttggtggtatttgcttccagattttccgcctccgtgtcagaggttcactattattggtttcggttgtg |
13058657 |
T |
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| Q |
118 |
atattgtagacggatttctagtttgttgtttcgaaacccgttagggtctgttattgtgcttgtggtgctcagtcttattgattgtccatcccacacgata |
217 |
Q |
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| T |
13058656 |
atattgtagacggatttctagtttgttgtttcgaaacccgttagggtctgttattgtgcttgtggtgctcagtctcattgattgtccatcccacacgatc |
13058557 |
T |
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| Q |
218 |
tggctatcgatgtggttatgggttgctctgtg |
249 |
Q |
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| T |
13058556 |
tggctatcgatgtggttctgggttgctttgtg |
13058525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 10280691 - 10280482
Alignment:
| Q |
18 |
tcaagggttgtgaagtggcgttgtttcgttagttggtggtatttgcttccagattttccgcctccgagtcagaggttcactattattggtttcggttgtg |
117 |
Q |
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| T |
10280691 |
tcaagggttgtgaagtggcgttgtttcgttggttgatggtatttgctttcaaatctgtcgcctccgtgtcgaaggttcactgtcgttggtttcagttgtg |
10280592 |
T |
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| Q |
118 |
atattgtagacggatttctagtttgttgtttcgaaacccgttagggtctgttattgtgcttgtggtgctcagtcttattgattgtccatcccacacgata |
217 |
Q |
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| T |
10280591 |
atattgtagacggatttctagtttgttgttctgaaactcgttagggtctgttattgtgctcgtggtgctcagtcccattgattgaccatcc--cacgatc |
10280494 |
T |
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| Q |
218 |
tggctatcgatg |
229 |
Q |
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| T |
10280493 |
tggctatcgatg |
10280482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 188
Target Start/End: Complemental strand, 5535910 - 5535752
Alignment:
| Q |
30 |
aagtggcgttgtttcgttagttggtggtatttgcttccagattttccgcctccgagtcagaggttcactattattggtttcggttgtgatattgtagacg |
129 |
Q |
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|||||| ||||||||||| ||||||||||||||||| ||||| | ||||| || | ||| ||||||| |||||||| ||||||||| |||||| | |
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| T |
5535910 |
aagtggagttgtttcgttggttggtggtatttgctttcagatatgtcgccttcgtggaggagaatcactatcgttggtttcagttgtgatactgtagatg |
5535811 |
T |
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| Q |
130 |
gatttctagtttgttgtttcgaaacccgttagggtctgttattgtgcttgtggtgctca |
188 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||| | |||||||| |
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| T |
5535810 |
aatttatagtttgttgtttcgaaattcgttagggtctgttattgtgctcgaggtgctca |
5535752 |
T |
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