View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4917_low_5 (Length: 207)
Name: NF4917_low_5
Description: NF4917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4917_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 11838255 - 11838079
Alignment:
| Q |
12 |
atcatcaacatcaggttcagccggcttccaaatctcgacaaggggtgctagcacattcactacgtgtcccatgtcaggacgctgattaggctcccttgca |
111 |
Q |
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| T |
11838255 |
atcatcaacatcaggttcagccggcttccaaatctcgacaaggggtgctagcacattcactacgtgtcccatgtcaggacgctgattaggctcccttgca |
11838156 |
T |
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| Q |
112 |
caacagtggctggccaatcctgcaatagtcctgaaactctccaagccttcctcgtcgatgtccattgctggatcaat |
188 |
Q |
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| T |
11838155 |
caacagtggctagccaatcctgcaatagtcctgaaactctccaagccttcctcgtcgatgtccattgctggatcaat |
11838079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 11850937 - 11850762
Alignment:
| Q |
13 |
tcatcaacatcaggttcagccggcttccaaatctcgacaaggggtgctagcacattcactacgtgtcccatgtcaggacgctgattaggctcccttgcac |
112 |
Q |
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|||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
11850937 |
tcatcagcttcaggttcagccggcttccaaatctcgacaagaggtgctagcacattcactacatgtcccatgtcaggacgctgatgaggctcccttgcac |
11850838 |
T |
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| Q |
113 |
aacagtggctggccaatcctgcaatagtcctgaaactctccaagccttcctcgtcgatgtccattgctggatcaat |
188 |
Q |
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| T |
11850837 |
aacattggcttgccaatcctgccatagtcctgaaactctccaggccttcctcgtctatgtccattgctggatcaat |
11850762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 11855585 - 11855760
Alignment:
| Q |
13 |
tcatcaacatcaggttcagccggcttccaaatctcgacaaggggtgctagcacattcactacgtgtcccatgtcaggacgctgattaggctcccttgcac |
112 |
Q |
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|||||| ||| |||||||||||||||||||||||| ||||| ||||||| |||||||||||||| |||||| || |||||||||| |||||||||||||| |
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| T |
11855585 |
tcatcagcattaggttcagccggcttccaaatctcaacaagaggtgctaacacattcactacgtatcccatatcgggacgctgatgaggctcccttgcac |
11855684 |
T |
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| Q |
113 |
aacagtggctggccaatcctgcaatagtcctgaaactctccaagccttcctcgtcgatgtccattgctggatcaat |
188 |
Q |
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| T |
11855685 |
agcagtggcttgccaattctgaaatgatcctgaaactctccaagccttcctcgttgatgtccattgctggatcaat |
11855760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 27442202 - 27442370
Alignment:
| Q |
20 |
catcaggttcagccggcttccaaatctcgacaaggggtgctagcacattcactacgtgtcccatgtcaggacgctgattaggctcccttgcacaacagtg |
119 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||| || |||||| ||||||| |||||||||| || |||| ||||| |
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| T |
27442202 |
catcaggttcagccggcttccaaatctcaacaagaggtgctagcacatggactacgtatcgcatgtcgggacgcttattaggctccttttcacagcagtg |
27442301 |
T |
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| Q |
120 |
gctggccaatcctgcaatagtcctgaaactctccaagccttcctcgtcgatgtccattgctggatcaat |
188 |
Q |
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|| |||||| ||||||||||||||||||||||||||||||||||||| || | ||||||||||||||| |
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| T |
27442302 |
tcttgccaattctgcaatagtcctgaaactctccaagccttcctcgtccattttcattgctggatcaat |
27442370 |
T |
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