View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4918-Insertion-1 (Length: 1030)

Name: NF4918-Insertion-1
Description: NF4918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4918-Insertion-1
NF4918-Insertion-1
[»] chr7 (8 HSPs)
chr7 (621-1011)||(37584740-37585141)
chr7 (14-309)||(37592069-37592377)
chr7 (484-959)||(37591489-37591982)
chr7 (8-189)||(37461906-37462087)
chr7 (812-959)||(37462479-37462629)
chr7 (237-309)||(37462214-37462286)
chr7 (462-531)||(3159534-3159602)
chr7 (430-532)||(3159368-3159470)
[»] chr5 (2 HSPs)
chr5 (433-532)||(14699605-14699704)
chr5 (455-531)||(4854294-4854368)
[»] chr1 (1 HSPs)
chr1 (438-496)||(1770448-1770506)
[»] chr2 (1 HSPs)
chr2 (488-533)||(35184513-35184558)


Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 621 - 1011
Target Start/End: Original strand, 37584740 - 37585141
Alignment:
Q  621 atacaatgttcttaaagtaaaaagcttgacttttcaaaacttaaatccattttagtgatgtaaagaacatacacaaaaacattgacggcgcaatttttag 720  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37584740 atacaatgttcttaaagtaaaaagcttgacttttcaaaacttaaatccattttagtgatgtaaagaacatacacaaaaacattgacagcgcaatttttag 37584839  T
Q  721 tggcaaactcatgaagcatgattatcatttactcaacatgtttgtataacttttacttaatgg-attgattccagtgcggg-aaatcagacttggatttg 818  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  37584840 tggcaaactcatgaagcatgattatcatttactcaacatgtttgtataacttttacttaatggaattgattccagtgcgggaaaatcagacttggatttg 37584939  T
Q  819 atgtaactttctttgcttttcgctg-atgaatgcatgcagtactccttgtttggctccatcttgactttcggtgccatgattggtgcaataac-agtgga 916  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||||    
T  37584940 atgtaactttctttgcttttcgctgaatgaatgcatgcagtactccttctttggctccatcttgactttcggtgcgatgattggcgcaataacaagtgga 37585039  T
Q  917 cctattg-cgatttcgttggacgaaagggggtaaattcagg-aaattattgt-gtcg-tcaggga-taacctccaaatggt--attattttatttggtgt 1009  Q
    ||||||| ||||||||||||||||||||| ||||||||||| |||||||| | |||| ||||||| |||||||||||| ||  |||||||||||||||||    
T  37585040 cctattgccgatttcgttggacgaaagggagtaaattcaggaaaattattatggtcgttcagggattaacctccaaattgttaattattttatttggtgt 37585139  T
Q  1010 at 1011  Q
    ||    
T  37585140 at 37585141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 14 - 309
Target Start/End: Complemental strand, 37592377 - 37592069
Alignment:
Q  14 tggtaagcagaaaggaatgagagaaccattgataggggaacaccacaaccaacttgtccatgcaaacaaagaacatcatcatccatggatgccttatttc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||| |||||||    
T  37592377 tggtaagcagaaaggaatgagagaaccattgataggggaacacaacaaccaacttgtccatgcaaacaaagatcatcattatccatggatgctttatttc 37592278  T
Q  114 accacattcattgcagtttgtggttcttatgaatttggtgcttgtataactctttac----ttctctgtaaatcagcaattattctatacaatttcaaga 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||    ||||||||||||||||||||||| |||||||||||||||    
T  37592277 accacattcattgcagtttgtggttcttatgaatttggtgcttgtgtaagtcttcacttctttctctgtaaatcagcaattattttatacaatttcaaga 37592178  T
Q  210 gttttattga---------atttttgtttctctagactggattttcatctccaactcaagatgctatcaggaaggatcttaatctttctttggcagaggt 300  Q
    |||||||  |         |||||||||| || ||||||| | |||||||||| |||||||||||||||||| |||||||||||| ||||||| ||||||    
T  37592177 gttttatataatttttgttatttttgtttttccagactgggtattcatctccagctcaagatgctatcaggagggatcttaatctgtctttggaagaggt 37592078  T
Q  301 aagccagta 309  Q
    |||||||||    
T  37592077 aagccagta 37592069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 484 - 959
Target Start/End: Complemental strand, 37591982 - 37591489
Alignment:
Q  484 caaattggagagaatgtgatagtatagggatcaaattgatggtttattcaaaacatgcaaaattgactgaaaatgattagcagaacagttgaaccttggc 583  Q
    |||| ||||||||| |||||||| |||||| |||||| | |||| |||||||||||   ||||||||||||||||||||||| | ||||||| | |||||    
T  37591982 caaaatggagagaaagtgatagtttagggaccaaattcacggttcattcaaaacataggaaattgactgaaaatgattagcata-cagttgagctttggc 37591884  T
Q  584 tcctagtattttattaag-aagtagctgcaagaaattaatacaatgttcttaaagtaaaaagcttgacttttcaaaacttaaa-tccattttagtgatgt 681  Q
    |||| | | |  |||||| || | || |||||||||||||||||||||||||   || ||| |||||||| |||||||| ||| |  || ||||||||||    
T  37591883 tcct-gaact--attaagcaatttgcagcaagaaattaatacaatgttcttattttataaaacttgacttatcaaaactaaaaatgtatgttagtgatgt 37591787  T
Q  682 aaagaacatacacaaaaacattgacggcgcaatttttagtggcaaactcatgaagcatgattatcatttactcaacatgtttgtataacttttacttaat 781  Q
    ||| ||| |||||| ||||||||||  |  |||||||||||||||||||||||| |||||||||||| | || | ||||||||||||| |||||| |||     
T  37591786 aaaaaacttacacataaacattgacaacagaatttttagtggcaaactcatgaatcatgattatcatgtgcttagcatgtttgtataatttttacataac 37591687  T
Q  782 ggatt-gattccagtgc---------gggaaatcagacttggatttgatgtaactttctttgcttttcgctga-----tgaatgca---tgcagtactcc 863  Q
    | ||| ||| |||||||         || ||||||||| | ||||| |||||| ||||||||||||||| |||     || |||||   |||||||||||    
T  37591686 gtatttgatcccagtgcagcagtgctggaaaatcagacctagatttaatgtaattttctttgcttttcgttgaatgaatgtatgcacaatgcagtactcc 37591587  T
Q  864 ttgtttggctccatcttgactttcggtgccatgattggtgcaataac-agtggacctattg-cgatttcgttggacgaaagggggtaaattcaggaaa 959  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||| ||| |||||    
T  37591586 ttgtttggctccatcttgacttttggtgcgatgattggtgcaataactagtggacctattgccgaattcgttggacgaaagggggtaatttctggaaa 37591489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 8 - 189
Target Start/End: Original strand, 37461906 - 37462087
Alignment:
Q  8 ggaaggtggtaagcagaaaggaatgagagaaccattgataggggaacaccacaaccaacttgtccatgcaaacaaagaacatcatcatccatggatgcct 107  Q
    ||||||||| || ||||||||||| ||||||||||||||||| |||||  |||||||||||||||||||||||||||| ||||||||||||||||||  |    
T  37461906 ggaaggtggcaaacagaaaggaataagagaaccattgataggtgaacaaaacaaccaacttgtccatgcaaacaaagatcatcatcatccatggatggtt 37462005  T
Q  108 tatttcaccacattcattgcagtttgtggttcttatgaatttggtgcttgtataactctttacttctctgtaaatcagcaat 189  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  37462006 tacttcaccacattcattgcagtttgtggttcttatgaatttggtgcttgtgtaagtctttacttctctgtaaatcagcaat 37462087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 812 - 959
Target Start/End: Original strand, 37462479 - 37462629
Alignment:
Q  812 ggatttgatgtaactttctttgcttttcgctgat-gaatgcatgcagtactccttgtttggctccatcttgactttcggtgccatgattggtgcaataac 910  Q
    ||||||||||||| ||||||||||||| |  ||| || |  ||||||||||||||||||||||||||||| || || ||||| |||||||| ||||||||    
T  37462479 ggatttgatgtaattttctttgctttttgtggattgactaaatgcagtactccttgtttggctccatcttaacatttggtgcgatgattggcgcaataac 37462578  T
Q  911 -agtggacctattgc-gatttcgttggacgaaagggggtaaattcaggaaa 959  Q
     |||||||||||||| |||||||||||| |||||||||||| |||||||||    
T  37462579 aagtggacctattgctgatttcgttggaagaaagggggtaatttcaggaaa 37462629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 37462214 - 37462286
Alignment:
Q  237 ctggattttcatctccaactcaagatgctatcaggaaggatcttaatctttctttggcagaggtaagccagta 309  Q
    |||||| |||||||||||||||||| ||||| ||||||||||||| ||| |||||||||||||||||||||||    
T  37462214 ctggatattcatctccaactcaagaagctattaggaaggatcttagtctgtctttggcagaggtaagccagta 37462286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 462 - 531
Target Start/End: Original strand, 3159534 - 3159602
Alignment:
Q  462 tatatttctatagttcaggaaccaaattggagagaatgtgatagtatagggatcaaattgatggtttatt 531  Q
    |||||||||||||||||||| ||||||||| || || |||||||| ||||||||||||||||| ||||||    
T  3159534 tatatttctatagttcagga-ccaaattggtgacaaggtgatagtttagggatcaaattgatgatttatt 3159602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 430 - 532
Target Start/End: Complemental strand, 3159470 - 3159368
Alignment:
Q  430 gatggattaataatagttcagggagtatttaatatatttctatagttcaggaaccaaattggagagaatgtgatagtatagggatcaaattgatggttta 529  Q
    |||| ||||||| ||||| | ||| |||| | ||||||||||||  || || ||||||||||||||||  |||||||  | ||| |||||||||| ||||    
T  3159470 gatgaattaatattagtttatggactattgagtatatttctataactcggggaccaaattggagagaaaatgatagttcaaggaccaaattgatgattta 3159371  T
Q  530 ttc 532  Q
    |||    
T  3159370 ttc 3159368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 532
Target Start/End: Original strand, 14699605 - 14699704
Alignment:
Q  433 ggattaataatagttcagggagtatttaatatatttctatagttcaggaaccaaattggagagaatgtgatagtatagggatcaaattgatggtttattc 532  Q
    |||||||||||| || ||||| |||||||||||||| |||||||   | |  || |||   | | ||||||| |||||||||||||||||||||||||||    
T  14699605 ggattaataataatttagggattatttaatatatttttatagtttgtggattaagttgacaaaagtgtgataatatagggatcaaattgatggtttattc 14699704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 455 - 531
Target Start/End: Original strand, 4854294 - 4854368
Alignment:
Q  455 tatttaatatatttctatagttcaggaaccaaattggagagaatgtgatagtatagggatcaaattgatggtttatt 531  Q
    |||||| ||||||| |||| || ||| |||||||||||||||  |||||| | || |||| ||||||||||||||||    
T  4854294 tatttattatatttatatactttagggaccaaattggagaga--gtgatactttatggattaaattgatggtttatt 4854368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 438 - 496
Target Start/End: Complemental strand, 1770506 - 1770448
Alignment:
Q  438 aataatagttcagggagtatttaatatatttctatagttcaggaaccaaattggagaga 496  Q
    |||||||||| | |||||||||| ||||||||||||||||| | |||||| || |||||    
T  1770506 aataatagtttatggagtatttattatatttctatagttcacggaccaaactgtagaga 1770448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 488 - 533
Target Start/End: Complemental strand, 35184558 - 35184513
Alignment:
Q  488 ttggagagaatgtgatagtatagggatcaaattgatggtttattca 533  Q
    |||||||||| ||| |||| || |||||||||||||||||||||||    
T  35184558 ttggagagaaagtgctagtttaaggatcaaattgatggtttattca 35184513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University