View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4918-Insertion-2 (Length: 636)
Name: NF4918-Insertion-2
Description: NF4918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4918-Insertion-2 |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 535; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 28 - 631
Target Start/End: Original strand, 10510451 - 10511050
Alignment:
| Q |
28 |
cattacttattgagaattgagaggaataactaactaatgacctttaaatcaaataaaaggaccagattttaataggtttgcttgaaactacatatctttg |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10510451 |
cattacttattgagaattgagaggaataactaactaatgacctttaaatcaaataaaaggaccagattttaataggtttgcttgaaactacatatctttg |
10510550 |
T |
|
| Q |
128 |
ttgtagtgaagagacgaaatgccagcaaatagggaaagcaatggtgcaagaatacaaagtccaaaacaatataagataaaaagaaaacgaacgccaccaa |
227 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10510551 |
ttgtagtgaagagacgaaatgcctgcaaatagggaaagcaatggtgcaagaatacaaagtccaaaacagtataagataaaaagaaaacgaacgccaccaa |
10510650 |
T |
|
| Q |
228 |
caataggcaaaagcccctccagaaaccatggcaagatcacccgagagcatcgcaaataggaaggaaccttgggacacagacaagcatacgtccgaaccca |
327 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||| |
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| T |
10510651 |
caataggcaaaagcccctctagaaaccatggcaagatcacccgagagcatcgcaaataggaaggaaccgtgggacgcagacaagcatacgtccggaccca |
10510750 |
T |
|
| Q |
328 |
tagtgatccgacaaattcctccataaatcatcatcctctacagcaaaggacaagttatattgaccacatcctaaaaggtgcaaggggtgaccagaggttt |
427 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10510751 |
tagtgatccgacaaattcctccataaatcactatcctctacagcaaaggacaagttatattgaccacatcctaaaaggtgcaaggggtgaccagaggttt |
10510850 |
T |
|
| Q |
428 |
taccagaaaaccgttagagcatctcaaccgctagaacaatgttgatgttctcaagttaatttatttttgtgggccaataattgccacatagaattcaaga |
527 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10510851 |
taccaggaaactgttagagcatctcaaccgctagaacaatgttgatgttctcaagtta----atttttgtgggccaataattgccacatagaattcaaga |
10510946 |
T |
|
| Q |
528 |
atttttctcattttcactacaatgcatttaagttcttaatttattttatatggggtccaccatgaacttcacatattatattttcttttcctttcctctt |
627 |
Q |
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| T |
10510947 |
actttcctcattttcactacaatgcatttaagttcttaatttgttttatatggggtccaccatgaacttcacatattatattttcttttcctttcctctt |
10511046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 447 - 627
Target Start/End: Original strand, 8436267 - 8436444
Alignment:
| Q |
447 |
catctcaaccgctagaacaatgttgatgttctcaagttaatttatttttgtgggccaataattgccacatagaattcaagaatttttc-tcattttcact |
545 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||| | | ||||||||||| |
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| T |
8436267 |
catctccaccgctagaacaatgttgatgttctcaagttaattt----ttgtaggccaataattgccacataggattcaagatcactccctcattttcact |
8436362 |
T |
|
| Q |
546 |
acaatgcatttaagttcttaatttattttatatggggtccaccatgaacttcacatattatattttcttttcctttcctctt |
627 |
Q |
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|||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||| |
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| T |
8436363 |
acaatgcatttaagttcttaatttgttttatatggggtctaccataaacttcacatagtatattttcttttcatttcctctt |
8436444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 544 - 628
Target Start/End: Complemental strand, 13430869 - 13430785
Alignment:
| Q |
544 |
ctacaatgcatttaagttcttaatttattttatatggggtccaccatgaacttcacatattatattttcttttcctttcctcttc |
628 |
Q |
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| T |
13430869 |
ctacaatgcatttaagttcttaatttgttttatatggggtccaccatgaacttcacatattatattttcttttcctttcctcttc |
13430785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 560 - 628
Target Start/End: Complemental strand, 25001270 - 25001202
Alignment:
| Q |
560 |
ttcttaatttattttatatggggtccaccatgaacttcacatattatattttcttttcctttcctcttc |
628 |
Q |
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| T |
25001270 |
ttcttagtttgttttatatgaggtccaccatgaacttcacatattatatattcatttcctttcctcttc |
25001202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 490 - 565
Target Start/End: Complemental strand, 25001362 - 25001287
Alignment:
| Q |
490 |
atttttgtgggccaataattgccacatagaattcaagaatttttctcattttcactacaatgcatttaagttctta |
565 |
Q |
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| T |
25001362 |
atttttttgggccaataattaccacatagaattcaagaattttcatcattttgactgcaatgtattcaagttctta |
25001287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 115; Significance: 4e-58; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 490 - 628
Target Start/End: Original strand, 152905 - 153043
Alignment:
| Q |
490 |
atttttgtgggccaataattgccacatagaattcaagaatttttctcattttcactacaatgcatttaagttcttaatttattttatatggggtccacca |
589 |
Q |
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||||||||||||||| |||||||| |||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
152905 |
atttttgtgggccaacaattgccatataggattcaagaactttcctcattttcactacaatgcatttaagttcttaatttgttttatatggggtccacca |
153004 |
T |
|
| Q |
590 |
tgaacttcacatattatattttcttttcctttcctcttc |
628 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
153005 |
tgaacttcacatattatattttcttttcctttcctcttc |
153043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 1e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 441 - 628
Target Start/End: Complemental strand, 43377367 - 43377184
Alignment:
| Q |
441 |
ttagagcatctcaaccgctagaacaatgttgatgttctcaagttaatttatttttgtgggccaataattgccacatagaattcaagaatttttctcattt |
540 |
Q |
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|
|||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| ||| ||||||| |
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| T |
43377367 |
ttagagcatctccgctcctagaacaatgttgatgttctcaagttaattt----ttgtgggccaataattgccacataggatttaagaactttcctcattt |
43377272 |
T |
|
| Q |
541 |
tcactacaatgcatttaagttcttaatttattttatatggggtccaccatgaacttcacatattatattttcttttcctttcctcttc |
628 |
Q |
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| T |
43377271 |
ttgctacaatgcatctaagttcttaatttattttatatggggtccaccatgaactttccatattatattttattttccttttctcttc |
43377184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 457 - 618
Target Start/End: Complemental strand, 48757282 - 48757126
Alignment:
| Q |
457 |
gctagaacaatgttgatgttctcaagttaatttatttttgtgggccaataattgccacatagaattcaagaatttttct-cattttcactacaatgcatt |
555 |
Q |
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||||||| |||||||||||||||| |||||||| |||||||||||||||||| |||||| ||||||||| |||| ||||||||||||||| |||| |
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| T |
48757282 |
gctagaataatgttgatgttctcatgttaattt----ttgtgggccaataattgctacataggattcaagaacacttcttcattttcactacaattcatt |
48757187 |
T |
|
| Q |
556 |
taagttcttaatttattttatatggggtccaccatgaacttcacatattatattttcttttcc |
618 |
Q |
| |
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|||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
48757186 |
taagttcttaatttgttttatatgcggtccaccatgaacttcacata--gtattttcttttcc |
48757126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 460 - 608
Target Start/End: Complemental strand, 10227658 - 10227513
Alignment:
| Q |
460 |
agaacaatgttgatgttctcaagttaatttatttttgtgggccaataattgccacatagaattc-aagaatttttctcattttcactacaatgcatttaa |
558 |
Q |
| |
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|||||||| ||||||||||||| || ||||||||||||||||||||||||||||||| || ||||| ||| ||||||||||| |||||||||||| |
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| T |
10227658 |
agaacaatattgatgttctcaatgta----atttttgtgggccaataattgccacatagaactctaagaactttcatcattttcactgcaatgcatttaa |
10227563 |
T |
|
| Q |
559 |
gttcttaatttattttatatggggtccaccatgaacttcacatattatat |
608 |
Q |
| |
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||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10227562 |
gttcttagtttgttttatatggggtccaccatgaacttcacatattatat |
10227513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 457 - 627
Target Start/End: Original strand, 43974831 - 43974999
Alignment:
| Q |
457 |
gctagaacaatgtt-gatgttctcaagttaatttatttttgtgggccaataattgccaca--tagaattcaagaatttttc-tcattttcactacaat-g |
551 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||| |||||||||| ||||| ||||| ||| ||| ||||| | | |||||||||||||||| | |
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| T |
43974831 |
gctagaacaatgtttgatattctcaagttaattt----ttgtgggccactaattaccacacataggatttaagaacactccctcattttcactacaattg |
43974926 |
T |
|
| Q |
552 |
catttaagttcttaatttattttatatggggtccaccatgaacttcacatattatattttcttttcctttcctctt |
627 |
Q |
| |
|
|||||||||||||||||| ||||||| || ||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
43974927 |
catttaagttcttaatttgttttatacggcgtccaccatgaacttcaca---tatattttctttttctttcctctt |
43974999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 464 - 557
Target Start/End: Original strand, 33493464 - 33493554
Alignment:
| Q |
464 |
caatgttgatgttctcaagttaatttatttttgtgggccaataattgccacatagaattcaagaatttttc-tcattttcactacaatgcattta |
557 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||| ||||| | | |||||||||||||||| |||||| |
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| T |
33493464 |
caatgttgatgttctcaagtta----atttttgtgggccattaattgccacttaggattgaagaacaatccatcattttcactacaatacattta |
33493554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 512 - 628
Target Start/End: Complemental strand, 42654199 - 42654083
Alignment:
| Q |
512 |
cacatagaattcaagaatttttctcattttcactacaatgcatttaagttcttaatttattttatatggggtccaccatgaacttcacatattatatttt |
611 |
Q |
| |
|
||||||||||||||||| |||| ||||||| |||||||| |||||||||| || ||| |||||||||| |||||||| ||||||||||||||||| || |
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| T |
42654199 |
cacatagaattcaagaacttttatcatttttactacaatacatttaagtttgtagtttgatttatatgggatccaccataaacttcacatattatatatt |
42654100 |
T |
|
| Q |
612 |
cttttcctttcctcttc |
628 |
Q |
| |
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| ||||||| ||||||| |
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| T |
42654099 |
catttccttccctcttc |
42654083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 465 - 559
Target Start/End: Original strand, 40701215 - 40701305
Alignment:
| Q |
465 |
aatgttgatgttctcaagttaatttatttttgtgggccaataattgccacatagaattcaagaatttttctcattttcactacaatgcatttaag |
559 |
Q |
| |
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|||||| |||||||||||||||||| |||||||||||||||| |||||||| |||||| || ||| ||||||||||||| |||||||||||| |
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| T |
40701215 |
aatgttaatgttctcaagttaattt----ttgtgggccaataattaccacataggattcaaaaactttcctcattttcactaaaatgcatttaag |
40701305 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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