View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4918_high_1 (Length: 423)
Name: NF4918_high_1
Description: NF4918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4918_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 160 - 413
Target Start/End: Original strand, 37585432 - 37585685
Alignment:
| Q |
160 |
atgggcctaatggtaaacacagatactcaaataaatacagaggggaaaatgttatgaaccttcgaaattggaattccacgtaaaatgtcctcagattcga |
259 |
Q |
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| T |
37585432 |
atgggcctaatggtaaacacagatactcaaataaatacagaggggaaaatgttatgaacgttcgaaattggaattccacgtaaaatatcctcagattcga |
37585531 |
T |
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| Q |
260 |
accactaacctataacaaatgcaagtataaaaggaaatctcttaataattcaaagacatttaacatctaggacctggctggatcttacctgttagaaaaa |
359 |
Q |
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| T |
37585532 |
actactaacctataacaaatgcaagtataaaaggaaatctcttaataattcaaagacatttaacatctaggacctggctggatcttacctgttagaaaaa |
37585631 |
T |
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| Q |
360 |
atgataaaggggaagatacaagaggaaattgacagatctttaacattgatgatg |
413 |
Q |
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| T |
37585632 |
atgataaaggggaagatacaataggaaattgacagatctttaacattgaggatg |
37585685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 292 - 408
Target Start/End: Original strand, 37592680 - 37592800
Alignment:
| Q |
292 |
ggaaatctcttaataattcaaagacatttaacatctaggacctggctggatcttacctgt-------tagaaaaaatgataaaggggaagatacaagagg |
384 |
Q |
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| T |
37592680 |
ggaaatctcttaataattcaaagatttttaacatctagaacctagctggatcttatctgtaagactgtagcaaacatgatcaa---gaggatacaagagg |
37592776 |
T |
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| Q |
385 |
aaattgacagatctttaacattga |
408 |
Q |
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| T |
37592777 |
aaattggcagatctttaacattga |
37592800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 37592591 - 37592638
Alignment:
| Q |
240 |
taaaatgtcctcagattcgaaccactaacctataacaaatgcaagtat |
287 |
Q |
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| T |
37592591 |
taaaatgttctcagatttgaaccactaacatttaacaaatgcaagtat |
37592638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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