View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4919-Insertion-10 (Length: 284)
Name: NF4919-Insertion-10
Description: NF4919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4919-Insertion-10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 284
Target Start/End: Original strand, 3702504 - 3702780
Alignment:
| Q |
8 |
atttggaccaccaagaagtttggtcccataaaagctagaattagagtttatagagccaagctaagaaaccaagatagcccatgattttaaacactcaaaa |
107 |
Q |
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| T |
3702504 |
atttggaccaccacgaaggttggtcccataaaagctagaattagagtttatagagccaagctaagaaaccaagatagcccatgattttaaacactcgaaa |
3702603 |
T |
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| Q |
108 |
aatgaacataacataacaagttgaaactaaaaatttga-nnnnnnnacagtttgaaaaggtgggttgtgttgttaattcagataggcttagttccacgcc |
206 |
Q |
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| T |
3702604 |
aatgaacataacataacaagttgaaactaaaaatttgattttttttacagtttgaaaaggtgggttgtgttgttaattcagataggcttagttccacgcc |
3702703 |
T |
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| Q |
207 |
cagttccaccatcatcatcaacgccaccattgaactttggaaccattttagagacactctttcttttttctctctctc |
284 |
Q |
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| T |
3702704 |
cagttccaccatcatcatcaacgccaccactgaactttggaaccattttagagacact-ttttttttctctctctctc |
3702780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 8 - 264
Target Start/End: Complemental strand, 6601042 - 6600790
Alignment:
| Q |
8 |
atttggaccaccaagaagtttggtcccataaaagctagaattagagtttatagagccaagctaagaaaccaagatagcccatgattttaaacactcaaaa |
107 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6601042 |
atttggaccaccaagaaggttggtcccataaaagctagaattagagtttatagagccaagctaagaaaccaagatagcccatgattttaaaca-gcaaaa |
6600944 |
T |
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| Q |
108 |
aatgaacataacataacaagttgaaactaaaaatttgannnnnnnacagtttgaaaaggtgggttgtgttgttaattcagataggcttagttccacgccc |
207 |
Q |
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| T |
6600943 |
tatgaacataacataacaagttgaaactaaaaatttgatctttttacagtttcaaaagatgggttgtgttgttaattcagataggcttggttccacgccc |
6600844 |
T |
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| Q |
208 |
agttccaccatcatcatcaacgccaccattgaactttggaaccattttagagacact |
264 |
Q |
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|||||||| |||| |||||||||||||||||||| | |||||||| ||||||||| |
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| T |
6600843 |
agttccac---catcgtcaacgccaccattgaacttggaaaccatttcagagacact |
6600790 |
T |
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