View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4919-Insertion-4 (Length: 685)

Name: NF4919-Insertion-4
Description: NF4919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4919-Insertion-4
NF4919-Insertion-4
[»] chr6 (2 HSPs)
chr6 (6-590)||(10796950-10797534)
chr6 (582-685)||(10796300-10796403)
[»] chr4 (7 HSPs)
chr4 (6-590)||(50078540-50079124)
chr4 (170-427)||(50070300-50070557)
chr4 (582-685)||(50077890-50077993)
chr4 (582-685)||(49106920-49107023)
chr4 (582-666)||(50112144-50112228)
chr4 (112-145)||(50070604-50070637)
chr4 (442-470)||(50069988-50070016)
[»] chr2 (4 HSPs)
chr2 (595-662)||(43849695-43849762)
chr2 (334-405)||(13501504-13501575)
chr2 (334-405)||(13515307-13515378)
chr2 (359-399)||(13541874-13541914)


Alignment Details
Target: chr6 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 6 - 590
Target Start/End: Complemental strand, 10797534 - 10796950
Alignment:
Q  6 catcaagaagctcactttcgttgagggttagtaaacacattttctatacaaaa-gtaccgtatgnnnnnnnatgttattgattaaccaaacatatatgtc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||       ||||||||||| || ||| ||||||||||    
T  10797534 catcaagaagctcactttcgttgagggttagtaaacacattttctatacaaaatgtatcatatgtttttttatgttattgatgaagcaa-catatatgtc 10797436  T
Q  105 tgcaggaggacaaaccttgtatgtgttgcaccaaattgatgcgattgatgaagcaaacttgggatataactatagtatagttggaggagtcgggttgcca 204  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10797435 tgcaggaggacaaaccttgtatgtgttgcaccaaattgatgcaattgatgaagcaaacttgggatataactatagtatagttggaggagtcgggttgcca 10797336  T
Q  205 gagacagtcgaaaagatatcatttgaagcgaaattggttgaaggcgcaaatggaggatctattggaaagacgaccgttaaataccaaaccaaaggagatg 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||| |||||||||||||||||||||||||    
T  10797335 gagacagtcgaaaagatatcatttgaagcgaaattggttgaaggctcaaatggagggtctgttggaaagacgacagttaaataccaaaccaaaggagatg 10797236  T
Q  305 ctaagccaattgaaaaggaggttgaggaaggcaaagccaagggtgatgctcttttcaaggccattgggggttatgttttggccaatcctaattacaacta 404  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10797235 ctaagccaattgaaaaggaggttgaggaaggcaaagccaagggggatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaacta 10797136  T
Q  405 atccatcctccaatttaccaagtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaataaagttttttcttgtcagtttcttttcttacttt 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10797135 atccatcctccaatttaccaagtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaataaagttttttcttgtcagtttcttttcttacttt 10797036  T
Q  505 tgaactgggagatttgtgatgtttatgttgtatctcacttcatcaatgaataaattaatacaaatgaaatcactatccaagtaata 590  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10797035 tgaactgggagatttgtgatgtttatgttgtatctcacttcatcaatgaataaattaatacaaatgaaatcactatccaaataata 10796950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 582 - 685
Target Start/End: Complemental strand, 10796403 - 10796300
Alignment:
Q  582 caagtaatagagaattttgtagcataaaagaatcacaagttctgaagtgaattccctgattatgaacgtagccttaaacttttcaaactcaaaactcata 681  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10796403 caagtaatagagaattttgtagcataaaagaatcacaagttctgaagtgaattccctgattatgaacgtagccttaaacttttcaaactcaaaactcata 10796304  T
Q  682 gtta 685  Q
    ||||    
T  10796303 gtta 10796300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 501; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 6 - 590
Target Start/End: Complemental strand, 50079124 - 50078540
Alignment:
Q  6 catcaagaagctcactttcgttgagggttagtaaacacattttctatacaaaa-gtaccgtatgnnnnnnnatgttattgattaaccaaacatatatgtc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||       ||||||||||| || ||| ||||||||||    
T  50079124 catcaagaagctcactttcgttgagggttagtaaacacattttctatacaaaatgtatcatatgtttttttatgttattgatgaagcaa-catatatgtc 50079026  T
Q  105 tgcaggaggacaaaccttgtatgtgttgcaccaaattgatgcgattgatgaagcaaacttgggatataactatagtatagttggaggagtcgggttgcca 204  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50079025 tgcaggaggacaaaccttgtatgtgttgcaccaaattgatgcaattgatgaagcaaacttgggatataactatagtatagttggaggagtcgggttgcca 50078926  T
Q  205 gagacagtcgaaaagatatcatttgaagcgaaattggttgaaggcgcaaatggaggatctattggaaagacgaccgttaaataccaaaccaaaggagatg 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||| |||||||||||||||||||||||||    
T  50078925 gagacagtcgaaaagatatcatttgaagcgaaattggttgaaggctcaaatggagggtctgttggaaagacgacagttaaataccaaaccaaaggagatg 50078826  T
Q  305 ctaagccaattgaaaaggaggttgaggaaggcaaagccaagggtgatgctcttttcaaggccattgggggttatgttttggccaatcctaattacaacta 404  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  50078825 ctaagccaattgaaaaggaggttgaggaaggcaaagccaagggggatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaacta 50078726  T
Q  405 atccatcctccaatttaccaagtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaataaagttttttcttgtcagtttcttttcttacttt 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50078725 atccatcctccaatttaccaagtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaataaagttttttcttgtcagtttcttttcttacttt 50078626  T
Q  505 tgaactgggagatttgtgatgtttatgttgtatctcacttcatcaatgaataaattaatacaaatgaaatcactatccaagtaata 590  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50078625 tgaactgggagatttgtgatgtttatgttgtatctcacttcatcaatgaataaattaatacaaatgaaatcactatccaaataata 50078540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 170 - 427
Target Start/End: Complemental strand, 50070557 - 50070300
Alignment:
Q  170 ataactatagtatagttggaggagtcgggttgccagagacagtcgaaaagatatcatttgaagcgaaattggttgaaggcgcaaatggaggatctattgg 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  50070557 ataactatagtatagttggaggagtcgggttgccagagacagtcgaaaagatatcatttgaagcgaaattggttgaaggctcaaatggagggtctattgg 50070458  T
Q  270 aaagacgaccgttaaataccaaaccaaaggagatgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggtgatgctcttttcaaggccatt 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  50070457 aaagacgaccgttaaataccaaaccaaaggagatgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggggatgctcttttcaaggccatt 50070358  T
Q  370 gggggttatgttttggccaatcctaattacaactaatccatcctccaatttaccaagt 427  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50070357 gagggttatgttttggccaatcctaattacaactaatccatcctccaatttaccaagt 50070300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 582 - 685
Target Start/End: Complemental strand, 50077993 - 50077890
Alignment:
Q  582 caagtaatagagaattttgtagcataaaagaatcacaagttctgaagtgaattccctgattatgaacgtagccttaaacttttcaaactcaaaactcata 681  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50077993 caagtaatagagaattttgtagcataaaagaatcacaagttctgaagtgaattccctgattatgaacgtagccttaaacttttcaaactcaaaactcata 50077894  T
Q  682 gtta 685  Q
    ||||    
T  50077893 gtta 50077890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 582 - 685
Target Start/End: Complemental strand, 49107023 - 49106920
Alignment:
Q  582 caagtaatagagaattttgtagcataaaagaatcacaagttctgaagtgaattccctgattatgaacgtagccttaaacttttcaaactcaaaactcata 681  Q
    |||||||  ||||||||||||||||||||| || ||||||| |||||| |||||||| ||| |||| ||||||||| |||||||||||||||||||||||    
T  49107023 caagtaacggagaattttgtagcataaaagtattacaagttatgaagtaaattccctaattgtgaaagtagccttacacttttcaaactcaaaactcata 49106924  T
Q  682 gtta 685  Q
    ||||    
T  49106923 gtta 49106920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 582 - 666
Target Start/End: Original strand, 50112144 - 50112228
Alignment:
Q  582 caagtaatagagaattttgtagcataaaagaatcacaagttctgaagtgaattccctgattatgaacgtagccttaaacttttca 666  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||  ||| |||||||||||||||||| ||||    
T  50112144 caagtaaaagagaattttgtagcataaaagaatcacaagttatgaagtgaattcccaaattgtgaacgtagccttaaactcttca 50112228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 50070637 - 50070604
Alignment:
Q  112 ggacaaaccttgtatgtgttgcaccaaattgatg 145  Q
    ||||||||||||||||||||||||||||||||||    
T  50070637 ggacaaaccttgtatgtgttgcaccaaattgatg 50070604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 442 - 470
Target Start/End: Complemental strand, 50070016 - 50069988
Alignment:
Q  442 tttgtgtcttcttaatcttccaatgtaat 470  Q
    |||||||||||||||||||||||||||||    
T  50070016 tttgtgtcttcttaatcttccaatgtaat 50069988  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 595 - 662
Target Start/End: Original strand, 43849695 - 43849762
Alignment:
Q  595 attttgtagcataaaagaatcacaagttctgaagtgaattccctgattatgaacgtagccttaaactt 662  Q
    |||||||||  |||||||||||||| || ||||||||||| ||||||| ||||||||||||| |||||    
T  43849695 attttgtagtgtaaaagaatcacaaattatgaagtgaatttcctgattgtgaacgtagccttcaactt 43849762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 334 - 405
Target Start/End: Original strand, 13501504 - 13501575
Alignment:
Q  334 ggcaaagccaagggtgatgctcttttcaaggccattgggggttatgttttggccaatcctaattacaactaa 405  Q
    |||||||| |||||||||| ||||||||||||| ||| ||||||   |||||| |||||| |||||||||||    
T  13501504 ggcaaagctaagggtgatggtcttttcaaggcccttgagggttactgtttggctaatcctgattacaactaa 13501575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 334 - 405
Target Start/End: Original strand, 13515307 - 13515378
Alignment:
Q  334 ggcaaagccaagggtgatgctcttttcaaggccattgggggttatgttttggccaatcctaattacaactaa 405  Q
    |||||||| |||||||||| |||||||||||| || | ||||||   |||||| |||||| |||||||||||    
T  13515307 ggcaaagctaagggtgatggtcttttcaaggctatagagggttactgtttggctaatcctgattacaactaa 13515378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 359 - 399
Target Start/End: Original strand, 13541874 - 13541914
Alignment:
Q  359 tcaaggccattgggggttatgttttggccaatcctaattac 399  Q
    |||||||||||| ||||||||||||||| || |||||||||    
T  13541874 tcaaggccattgagggttatgttttggcaaaccctaattac 13541914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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