View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4919-Insertion-6 (Length: 608)
Name: NF4919-Insertion-6
Description: NF4919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4919-Insertion-6 |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 5 - 608
Target Start/End: Complemental strand, 5105915 - 5105311
Alignment:
| Q |
5 |
acatattggtatatgtatatgagaacaaagaacacagaacttggtgatttgttgggtgagaaatacattaaagaaagttacaaagcagtggcagaagaat |
104 |
Q |
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| T |
5105915 |
acatattggtatatgtatatgagaacaaagaacacagaacttggtgatttgttgggtgagaaatacattaaagaaagttacaaagcagtggcagaagaat |
5105816 |
T |
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| Q |
105 |
cagcttacttgtatcagaagcaagcttggttggttttggtgaagattttagatcaagatgatgat---ataaaggaacaaaaacaaggcaaggaaaaaag |
201 |
Q |
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| T |
5105815 |
cagcttacttgtatcagaagcaagcttggttggttttggtgaagattttagatcaagatgatgatgatataaaagaacaaaaacaaggcaaggaaaaaag |
5105716 |
T |
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| Q |
202 |
cattggaaggttggtgaatgaaaagattgagacattttttaagtgtttgagtgagatttgtgacaggcataggagtttttatagtatacctgatgttgat |
301 |
Q |
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| T |
5105715 |
cattggaaggttggtgaatgaaaagattgagacatttttcaagtgtttgagtgagatttgtgacaggcataggagtttttatagtatacctgatgttgat |
5105616 |
T |
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| Q |
302 |
ttgagggaacaaatgagggattcaacagtgaaacttgttgtgccagtttatgcggagtttttagagtcttattcaggatttttgcaaaggaaagtttatc |
401 |
Q |
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| T |
5105615 |
ttgagggaacaaatgagggattcaacagtgaaacttcttgtgccagtttatgctgagtttttagagtcttattcaggatttttgcaaaggaaagtttatc |
5105516 |
T |
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| Q |
402 |
ctagtcctcaaaggttgcaagggttgcttgggaaggcttttggttctaccaatgattggaatttgaatggtggacgtaattctggttctttggaaactga |
501 |
Q |
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| T |
5105515 |
ctagtcctcaaaggttgcaagggttgcttgggaaggcttttggttctaccaatgattggaatttgaatggtggacgtaattctggttcattggaaactga |
5105416 |
T |
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| Q |
502 |
tatcagaaggtctagatgagatcatggattcattcagcttcagctaaaataatttttgtgtctattaatgtaatgtatgtacttactttattgtgttttc |
601 |
Q |
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| T |
5105415 |
tatcagaaggtctagatgagatcatggattcattcaacttcagctaaaataatttt--tgtctattaatgtaatgtatgtacttactttattgtgttttc |
5105318 |
T |
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| Q |
602 |
tattgaa |
608 |
Q |
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| T |
5105317 |
tattgaa |
5105311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 9e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 436 - 608
Target Start/End: Original strand, 41417239 - 41417411
Alignment:
| Q |
436 |
ggcttttggttctaccaatgattggaatttgaatggtggacgtaattctggttctttggaaactgatatcagaaggtctagatgagatcatggattcatt |
535 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41417239 |
ggcttttggttctaccaatgattggaatttaaatggtggacgtaattctggttctttggaaactgatatcagaaggtctagatgagatcatgaattcatt |
41417338 |
T |
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| Q |
536 |
cagcttcagctaaaataatttttgtgtctattaatgtaatgtatgtacttactttattgtgttttctattgaa |
608 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41417339 |
cagcttccgctaaaataatttttgtgtccattaatgtaatgtatgtacttaatttattgtgttttctattgaa |
41417411 |
T |
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