View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4919_high_1 (Length: 609)

Name: NF4919_high_1
Description: NF4919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4919_high_1
NF4919_high_1
[»] chr8 (2 HSPs)
chr8 (2-593)||(11402499-11403091)
chr8 (25-95)||(11402306-11402376)
[»] chr5 (4 HSPs)
chr5 (32-407)||(35841855-35842251)
chr5 (32-407)||(12528771-12529167)
chr5 (243-409)||(12643795-12643962)
chr5 (427-477)||(12643967-12644017)
[»] chr2 (5 HSPs)
chr2 (32-407)||(42912884-42913280)
chr2 (25-237)||(42300721-42300933)
chr2 (243-318)||(42300959-42301034)
chr2 (420-526)||(42301083-42301189)
chr2 (420-526)||(42912819-42912925)
[»] chr1 (2 HSPs)
chr1 (32-407)||(29282025-29282421)
chr1 (420-526)||(29281960-29282066)
[»] chr4 (4 HSPs)
chr4 (32-407)||(27729984-27730380)
chr4 (32-407)||(45966142-45966538)
chr4 (32-407)||(24146874-24147261)
chr4 (420-526)||(45966497-45966603)
[»] chr6 (1 HSPs)
chr6 (32-407)||(29303875-29304271)


Alignment Details
Target: chr8 (Bit Score: 569; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 2 - 593
Target Start/End: Complemental strand, 11403091 - 11402499
Alignment:
Q  2 gcaaaggatgtatcgaaagtcat-tcaacaaaatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgc 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11403091 gcaaaggatgtatcgaaagtcatgtcaacaaaatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgc 11402992  T
Q  101 tgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402991 tgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaaga 11402892  T
Q  201 ggatgtggaaacttcgatcaatggagagacaataatttcaagaggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttac 300  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402891 ggacgtggaaacttcgatcaatggagagacaataatttcaagaggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttac 11402792  T
Q  301 aaacaagagagaccaaattacagttgttttcaccgttgaaattttaggcacaaagcagccgattgcaaatacaacatcaggcaaacgtggcagaaaattc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402791 aaacaagagagaccaaattacagttgttttcaccgttgaaattttaggcacaaagcagccgattgcaaatacaacatcaggcaaacgtggcagaaaattc 11402692  T
Q  401 atatcaaaacactgatgagtcttgtgaaagtgtattgcttgctaaaattaaaccatatggattttcataagactcacaattgttttgatctaaattttct 500  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  11402691 atatcaaaacactaatgagtcttgtgaaagtgtattgcttgctaaaattaaaccatatggattttcataagactcacaattgttttgatataaatttttt 11402592  T
Q  501 gcaatctgtgcatgatgtttatatcttcaatcgtctgctttgcgctcaaacttttcgcggtgaaaacataatttctcctctcttggttgtaat 593  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402591 gcaatctgtgcatgatgtttatatcttcaatcgtctgctttgcgctcaaacttttcgcggtgaaaacataatttctcctctcttggttgtaat 11402499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 11402306 - 11402376
Alignment:
Q  25 tcaacaaaatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataac 95  Q
    |||||| ||||||| ||||||| || |||| ||||||||||||| ||||||| || |||||| ||||||||    
T  11402306 tcaacagaatattgcagaagacagagaaagcaaaggaggaagccttgaaaagtcaagtgaacttcaataac 11402376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 32 - 407
Target Start/End: Original strand, 35841855 - 35842251
Alignment:
Q  32 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggt 131  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||    | || |    
T  35841855 aatattggagaagactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagccagagct 35841954  T
Q  132 cgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagaca 231  Q
    ||||| |||||||||||||||||||||  ||| || ||||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||    
T  35841955 cgtgacaatttcaacaatggaggaagaggaaatttcagaggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagaca 35842054  T
Q  232 ataatttcaa--------------------gaggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagag 311  Q
    | |||| |||                     ||||| ||||||||||||||||||||| |  ||||||||||||| |||||||| |||||| ||||||||    
T  35842055 acaattacaacaatttcaatccatcccatcaaggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttgttacaaccaagagag 35842154  T
Q  312 accaaattacagttgttttcaccgttgaaattttaggcacaaagcagccgattgcaaata-caacatcaggcaaacgtggcagaaaattcatatcaa 407  Q
    | ||||| |  |||||||| |  || |||| | | ||||||||||||| || |||| |||  ||||||| |||||  ||||||| ||||||||||||    
T  35842155 aacaaataatggttgttttaattgtggaaagtatgggcacaaagcagctgactgcagatataaacatcaagcaaatatggcagagaattcatatcaa 35842251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 32 - 407
Target Start/End: Complemental strand, 12529167 - 12528771
Alignment:
Q  32 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggt 131  Q
    |||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||  | | |  |    
T  12529167 aatattggagaatactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaaggcagaact 12529068  T
Q  132 cgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagaca 231  Q
    ||||| |||||||||||||||||||||  ||  || ||||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||    
T  12529067 cgtgacaatttcaacaatggaggaagaggaagtttcagaggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagaca 12528968  T
Q  232 ataatttcaa--------------------gaggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagag 311  Q
    | |||| |||                     ||||| ||||||||||||||||||||| |  ||||||||||||| |||||||| |||||| ||||||||    
T  12528967 acaattacaacaatttcaatcaatcccatcaaggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttattacaaccaagagag 12528868  T
Q  312 accaaattacagttgttttcaccgttgaaattttaggcacaaagcagccgattgcaaata-caacatcaggcaaacgtggcagaaaattcatatcaa 407  Q
    | ||||| |  |||||||| |  || |||| | | ||||||||||||| || |||| |||  ||||||| |||||  ||||||| ||||||||||||    
T  12528867 aacaaataatggttgttttaattgtggaaagtatgggcacaaagcagctgactgcagatataaacatcaagcaaatatggcagagaattcatatcaa 12528771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 243 - 409
Target Start/End: Original strand, 12643795 - 12643962
Alignment:
Q  243 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaattacagttgttttcaccgttgaaat 342  Q
    ||||||||||||| |||||||| ||| |||||| | || || || || ||| | |||||| ||||||||| ||||||| |||||||| |||  |  |||     
T  12643795 aggaagaggtggagacaattttagttataccaatcatgacaaaggaaaaggatattacaaccaagagagaacaaattatagttgtttccactatgaaaag 12643894  T
Q  343 tttaggcacaaagcagccgattgcaaatac-aacatcaggcaaacgtggcagaaaattcatatcaaaa 409  Q
    ||| |||||||| |||| ||||||| |||| ||||||  | |||| || |||||||||||||||||||    
T  12643895 tttgggcacaaaacagctgattgcagatacaaacatcgagaaaacatgccagaaaattcatatcaaaa 12643962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 427 - 477
Target Start/End: Complemental strand, 12644017 - 12643967
Alignment:
Q  427 aaagtgtattgcttgctaaaattaaaccatatggattttcataagactcac 477  Q
    ||||||||||||||||||||| ||||| ||||||| |||||||||||||||    
T  12644017 aaagtgtattgcttgctaaaaataaactatatggaatttcataagactcac 12643967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 32 - 407
Target Start/End: Complemental strand, 42913280 - 42912884
Alignment:
Q  32 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggt 131  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||    | || |    
T  42913280 aatattggagaagactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagccagagct 42913181  T
Q  132 cgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagaca 231  Q
    ||||| |||||||||||||||||||||  ||| || ||||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||    
T  42913180 cgtgacaatttcaacaatggaggaagaggaaatttcagaggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagaca 42913081  T
Q  232 ataatttcaa--------------------gaggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagag 311  Q
    | |||| |||                     ||||| ||||||||||||||||||||| |  ||||||||||||| |||||||| |||||| ||||||||    
T  42913080 acaattacaacaatttcaatccatcccatcaaggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttattacaaccaagagag 42912981  T
Q  312 accaaattacagttgttttcaccgttgaaattttaggcacaaagcagccgattgcaaata-caacatcaggcaaacgtggcagaaaattcatatcaa 407  Q
    | ||||| |  |||||||| |  || |||| | | ||||||||||||| || |||| |||  ||||||| |||||  ||||||| ||||||||||||    
T  42912980 aacaaataatggttgttttaattgtggaaagtatgggcacaaagcagctgactgcagatataaacatcaagcaaatatggcagagaattcatatcaa 42912884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 25 - 237
Target Start/End: Original strand, 42300721 - 42300933
Alignment:
Q  25 tcaacaaaatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagag 124  Q
    |||||| |||||||||||||| |||||| ||||||||||||||| |||| ||||||||||||||||| ||| ||| ||||||| || ||| ||| ||       
T  42300721 tcaacagaatattggagaagagtgaaaatgtaaaggaggaagccttgaagagccaggtgaacctcaacaacattgttgaatccagtcagatgggtgaagc 42300820  T
Q  125 taaaggtcgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatgg 224  Q
     | || |||||| |||||||||||||||||||||  ||| || ||||| |||||| ||||||  ||||||||||||||| |||| |||||| | ||||||    
T  42300821 cagagctcgtgacaatttcaacaatggaggaagaggaaatttcagaggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatgg 42300920  T
Q  225 agagacaataatt 237  Q
    |||||||| ||||    
T  42300921 agagacaacaatt 42300933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 243 - 318
Target Start/End: Original strand, 42300959 - 42301034
Alignment:
Q  243 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaat 318  Q
    ||||||||||||||||||||||||||| |  | ||||||||||| |||||||| |||||| ||||||||| |||||    
T  42300959 aggaagaggtggaaacaattttggttccaatagccgtggcagaggaagaggttattacaaccaagagagaacaaat 42301034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 526
Target Start/End: Complemental strand, 42301189 - 42301083
Alignment:
Q  420 tcttgtgaaagtgtattgcttgctaaaattaaaccatatggattttcataagactcacaattgttttgatctaaattttctgcaatctgtgcatgatgtt 519  Q
    |||| ||||||||||||||||||||||| ||||| || | |||||| | ||||||||| |   | ||||| | |||| ||||| || | ||| |||||||    
T  42301189 tcttctgaaagtgtattgcttgctaaaaataaactatgttgattttgagaagactcaccaaaatgttgatatgaattctctgccatatttgcctgatgtt 42301090  T
Q  520 tatatct 526  Q
    |||||||    
T  42301089 tatatct 42301083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 526
Target Start/End: Original strand, 42912819 - 42912925
Alignment:
Q  420 tcttgtgaaagtgtattgcttgctaaaattaaaccatatggattttcataagactcacaattgttttgatctaaattttctgcaatctgtgcatgatgtt 519  Q
    |||| ||||||||||||||||||||||| ||||| || | |||||| | ||||||||| |   | ||||| | |||| ||||| || | ||| |||||||    
T  42912819 tcttctgaaagtgtattgcttgctaaaaataaactatgttgattttgagaagactcaccaaaatgttgatatgaattctctgccatatttgcttgatgtt 42912918  T
Q  520 tatatct 526  Q
    |||||||    
T  42912919 tatatct 42912925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 32 - 407
Target Start/End: Complemental strand, 29282421 - 29282025
Alignment:
Q  32 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggt 131  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||    | || |    
T  29282421 aatattggagaagactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagccagagct 29282322  T
Q  132 cgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagaca 231  Q
    ||||| |||||||||||||||||||||  ||| || ||||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||    
T  29282321 cgtgacaatttcaacaatggaggaagaggaaatttcagaggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagaca 29282222  T
Q  232 ataatttcaa--------------------gaggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagag 311  Q
    | |||| |||                     ||||| ||||||||||||||||||||| |  ||||||||||||| |||||||| |||||| ||||||||    
T  29282221 acaattacaacaatttcaatccatcccatcaaggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttattacaaccaagagag 29282122  T
Q  312 accaaattacagttgttttcaccgttgaaattttaggcacaaagcagccgattgcaaata-caacatcaggcaaacgtggcagaaaattcatatcaa 407  Q
    | ||||| |  |||||||| |  || |||| | | ||||||||||||| || |||| |||  ||||||| |||||  ||||||| ||||||||||||    
T  29282121 aacaaataatggttgttttaattgtggaaagtatgggcacaaagcagctgactgcagatataaacatcaagcaaatatggcagagaattcatatcaa 29282025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 526
Target Start/End: Original strand, 29281960 - 29282066
Alignment:
Q  420 tcttgtgaaagtgtattgcttgctaaaattaaaccatatggattttcataagactcacaattgttttgatctaaattttctgcaatctgtgcatgatgtt 519  Q
    |||| ||||||||||||||||||||||| ||||| || | |||||| | ||||||||| |   | ||||| | |||| ||||| || | ||| |||||||    
T  29281960 tcttctgaaagtgtattgcttgctaaaaataaactatgttgattttgagaagactcaccaaaatgttgatatgaattctctgccatatttgcttgatgtt 29282059  T
Q  520 tatatct 526  Q
    |||||||    
T  29282060 tatatct 29282066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 4e-49; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 32 - 407
Target Start/End: Complemental strand, 27730380 - 27729984
Alignment:
Q  32 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggt 131  Q
    ||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||    | || |    
T  27730380 aatattggaaaagactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagccagagct 27730281  T
Q  132 cgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagaca 231  Q
    ||||| |||||||||||||||||||||  ||| || ||||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||    
T  27730280 cgtgacaatttcaacaatggaggaagaggaaatttcagaggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagaca 27730181  T
Q  232 ataatttcaa--------------------gaggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagag 311  Q
    | |||| |||                     ||||| ||||||||||||||||||||| |  ||||||||||||| |||||||| |||||| ||||||||    
T  27730180 acaattacaacaatttcaatccatcccatcaaggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttattacaaccaagagag 27730081  T
Q  312 accaaattacagttgttttcaccgttgaaattttaggcacaaagcagccgattgcaaata-caacatcaggcaaacgtggcagaaaattcatatcaa 407  Q
    | ||||| |  |||||||| |  || |||| | | ||||||||||||| || |||| |||  ||||||| |||||  ||||||| ||||||||||||    
T  27730080 aacaaataatggttgttttaattgtggaaagtatgggcacaaagcagctgactgcagatataaacatcaagcaaatatggcagagaattcatatcaa 27729984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 32 - 407
Target Start/End: Original strand, 45966142 - 45966538
Alignment:
Q  32 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggt 131  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||    | |  |    
T  45966142 aatattggagaagactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagccagaact 45966241  T
Q  132 cgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagaca 231  Q
    ||||| |||||||||||||||||||||  ||| || ||||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||    
T  45966242 cgtgacaatttcaacaatggaggaagaggaaatttcagaggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagaca 45966341  T
Q  232 ataatttcaa--------------------gaggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagag 311  Q
    | |||| |||                     ||||| |||||||||||| |||||||| |  ||||||||||||| |||||||| |||||| ||||||||    
T  45966342 acaattacaacaatttcaatccatcccatcaaggaaaaggtggaaacaactttggttccaataaccgtggcagaggaagaggttattacaaccaagagag 45966441  T
Q  312 accaaattacagttgttttcaccgttgaaattttaggcacaaagcagccgattgcaaata-caacatcaggcaaacgtggcagaaaattcatatcaa 407  Q
    | ||||| |  |||||||| |  || |||| | | ||||||||||||| || |||| |||  ||||||| |||||  ||||||| ||||||||||||    
T  45966442 aacaaataatggttgttttaattgtggaaagtatgggcacaaagcagctgactgcagatataaacatcaagcaaatatggcagagaattcatatcaa 45966538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 32 - 407
Target Start/End: Original strand, 24146874 - 24147261
Alignment:
Q  32 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggt 131  Q
    ||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| ||||| ||| ||| | |||||  ||||| ||| ||    | ||      
T  24146874 aatattggataagactgaaaaagtaaaggaggaagccttgaagagccaggtgaagctcaacaacattgtttaatccaattagatgggtgaagccagagaa 24146973  T
Q  132 cgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagaca 231  Q
     |||| |||||||||| ||||  ||||  ||| || |||| || |||| ||||||| ||||||||||||||| |||| |||||| | |||||||||||||    
T  24146974 tgtgacaatttcaacattggattaagaggaaatttcagagttaaaggtcgaggaacctttagaggaagaggacgtggcaacttcaaccaatggagagaca 24147073  T
Q  232 ataatttcaag-----------aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaatta 320  Q
    | ||||||||            |||||||||||||||||||||||| || | |||||||||||||| |||||||| |||||| ||||||||   |||| |    
T  24147074 acaatttcaatccatcccatcaaggaagaggtggaaacaattttggctccaacaaccgtggcagaggaagaggttattacaaccaagagaggaaaaataa 24147173  T
Q  321 cagttgttttcaccgttgaaattttaggcacaaagcagccgattgcaaatac-aacatcaggcaaacgtggcagaaaattcatatcaa 407  Q
      |||| ||| |  || |||| |  |||||||||| ||| ||||| | |||| ||||| |||||||| ||||||| ||||||||||||    
T  24147174 tggttgctttaattgtggaaagtacaggcacaaagaagctgattgtagatacaaacataaggcaaacatggcagagaattcatatcaa 24147261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 526
Target Start/End: Complemental strand, 45966603 - 45966497
Alignment:
Q  420 tcttgtgaaagtgtattgcttgctaaaattaaaccatatggattttcataagactcacaattgttttgatctaaattttctgcaatctgtgcatgatgtt 519  Q
    |||| ||||||||||||||||||||||| ||||| || | |||||| | ||||||||| |   | ||||| | |||| ||||| || | ||| |||||||    
T  45966603 tcttctgaaagtgtattgcttgctaaaaataaactatgttgattttgagaagactcaccaaaatgttgatatgaattctctgccatatttgcttgatgtt 45966504  T
Q  520 tatatct 526  Q
    |||||||    
T  45966503 tatatct 45966497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 9e-47; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 32 - 407
Target Start/End: Original strand, 29303875 - 29304271
Alignment:
Q  32 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggt 131  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||   || |  |    
T  29303875 aatattggagaagactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagctagaact 29303974  T
Q  132 cgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagaca 231  Q
    ||||| |||||||||||||||||||||  ||  || ||||| |||| | ||||||  ||||||||||||||| |||| |||||| | |||||||||||||    
T  29303975 cgtgacaatttcaacaatggaggaagaggaagtttcagaggaagagatcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagaca 29304074  T
Q  232 ataatttcaa--------------------gaggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagag 311  Q
    | |||| |||                     ||||| ||||||||||||||||||||| |  ||||||||||||| |||||||| |||||| ||||||||    
T  29304075 acaattacaacaatttcaatcaatcccatcaaggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttattacaaccaagagag 29304174  T
Q  312 accaaattacagttgttttcaccgttgaaattttaggcacaaagcagccgattgcaaata-caacatcaggcaaacgtggcagaaaattcatatcaa 407  Q
    | ||||| |  |||||||| |  || |||| | | ||||||||||||| || |||| |||  ||||||| |||||  ||||||| ||||||||||||    
T  29304175 aacaaataatggttgttttaattgtggaaagtatgggcacaaagcagctgactgcagatataaacatcaagcaaatatggcagagaattcatatcaa 29304271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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