View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4919_high_11 (Length: 331)
Name: NF4919_high_11
Description: NF4919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4919_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 49 - 321
Target Start/End: Original strand, 23435374 - 23435646
Alignment:
| Q |
49 |
tgaatatccagaactgattttattgattagtagtatattctttgaacagctagtttgttatttctgtttagaagcttctattctatttaatcatgactgt |
148 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23435374 |
tgaatgtccagaactgattttattgattactagtatattctttgaacagctagtttgttagtgctgtttagaagcttctattctatttaatcatgactgt |
23435473 |
T |
|
| Q |
149 |
gtagttcaattagagtggtggttggttgacaatactagattatttttcccgtaccgttgatttatgacttttattgttttctattctaaagatacaactt |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23435474 |
gtagttcaattagagtggtggttggttgacaatactagattatttttcccttaccgttgatttatgacttttattgttttctattctaaagatacaactt |
23435573 |
T |
|
| Q |
249 |
ggtatgttgttctctggcaacatcagtttaacctcttccttttttccatctctaatcactccgacgacctatg |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23435574 |
ggtatgttgttctctggcaacatcagtttaacctcttccttttttccatctctaatcactccgacgacctatg |
23435646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 23470867 - 23471016
Alignment:
| Q |
18 |
ataaatagatagatacgataaaatattctattgaatatccagaactgattttattgattagtagtatattctttgaacagctagtttgttatttctgttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23470867 |
ataaatagatagatacgataaaatattctattgaatgtccagaactgattttattgattagtagtatattctttgaacagctagtttgttatttctgttt |
23470966 |
T |
|
| Q |
118 |
agaagcttctattctatttaatcatgactgtgtagttcaattagagtggt |
167 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23470967 |
agaaccttctattctatttaatcatgactgtgtagttcaattagagtggt |
23471016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 204 - 321
Target Start/End: Original strand, 23471019 - 23471136
Alignment:
| Q |
204 |
gttgatttatgacttttattgttttctattctaaagatacaacttggtatgttgttctctggcaacatcagtttaacctcttccttttttccatctctaa |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23471019 |
gttgatttatgacttttattgttttctattctaaagatataacttggtatgttgttctctggcaacatcagtttaacctcttccttttttccgtctctaa |
23471118 |
T |
|
| Q |
304 |
tcactccgacgacctatg |
321 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
23471119 |
tcactccgacgacctatg |
23471136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University