View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4919_high_12 (Length: 286)
Name: NF4919_high_12
Description: NF4919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4919_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 31002106 - 31002365
Alignment:
| Q |
19 |
atttattcttcaatctctatttttggtgattggacataattagtatgcagtgatacttttatttattgcatatcatcatctgctgaatattaatgcaatt |
118 |
Q |
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| T |
31002106 |
atttattcttcaatctctatttttggtgattggacataattagtatgcagtgatacttttatttattgcatatcatcatctgctgaatattaatgcaatt |
31002205 |
T |
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| Q |
119 |
gtacatgaccgcatatctaatctgtgcagagaacgtcccaggaatttcgtctcttcatatagaagaccttcgatctgttgttcgcggaaaccatcctcga |
218 |
Q |
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| T |
31002206 |
gtacatgaccgcatatctaatctgtgcagagaacgtcccaggaatttcgtctcttcatatagaagaccttcgatctgttgttcgcggaaaccatcctcga |
31002305 |
T |
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| Q |
219 |
gcaatgcagctctcattggaatgcatttccaaagttaccaaagcaaattaccttcttctc |
278 |
Q |
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| T |
31002306 |
gcaatgcagctctcattggaatgcatttccaaagttaccaaagcaaattaccttcttctc |
31002365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 51 - 278
Target Start/End: Original strand, 30998970 - 30999201
Alignment:
| Q |
51 |
gacataattagtatgcagtgatacttttatttattgcatat----catcatctgctgaatattaatgcaattgtacatgaccgcatatctaatctgtgca |
146 |
Q |
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| T |
30998970 |
gacatatttaatatggagtgatacttttatttattgcatatatatcattatctgctaaaaattaatgcaattgtacatgactgcttatctaatctgtgca |
30999069 |
T |
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| Q |
147 |
gagaacgtcccaggaatttcgtctcttcatatagaagaccttcgatctgttgttcgcggaaaccatcctcgagcaatgcagctctcattggaatgcattt |
246 |
Q |
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| T |
30999070 |
gagaatatccctggaatttcgtctcttcatatagaagaccttcgaactgttgttcgcggagacgatcctcaaaatatacagctctcattggaatgcattt |
30999169 |
T |
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| Q |
247 |
ccaaagttaccaaagcaaattaccttcttctc |
278 |
Q |
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| T |
30999170 |
ccaaggttaccaaagcaaattaccttcttctc |
30999201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 89 - 278
Target Start/End: Original strand, 30992041 - 30992230
Alignment:
| Q |
89 |
tatcatcatctgctgaatattaatgcaattgtacatgaccgcatatctaatctgtgcagagaacgtcccaggaatttcgtctcttcatatagaagacctt |
188 |
Q |
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| T |
30992041 |
tatcatcatctgccgaatattaatgcaattgtacatgcctgcgtatctaatctgtgcagagaacatcccagaaatttcgtctgttcatatggaagacctt |
30992140 |
T |
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| Q |
189 |
cgatctgttgttcgcggaaaccatcctcgagcaatgcagctctcattggaatgcatttccaaagttaccaaagcaaattaccttcttctc |
278 |
Q |
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| T |
30992141 |
cgaactgttgtacgcagaaacgatcagccaacaatgcagcttgcactggaatgcatttccgaggttaacaaagcaaattaccttcttctc |
30992230 |
T |
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