View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4919_high_16 (Length: 243)
Name: NF4919_high_16
Description: NF4919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4919_high_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 95 - 227
Target Start/End: Original strand, 4522516 - 4522648
Alignment:
| Q |
95 |
agccttgcgacattcttcattgacagctagataatgatccatatcaaaactactcaactgcaagtttagagattgatataaaagaattcatacatacatn |
194 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4522516 |
agccttgcgacgttcttcaatgacagctagataatgatccatatcaaaactactcaactgcaagtttagagattgatataaaagaattcatacatgcata |
4522615 |
T |
|
| Q |
195 |
nnnnnnttaaatttgtgaaacctgtataaaaag |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
4522616 |
aaaaaattaaatttgtgaaacctgtataaaaag |
4522648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 4522449 - 4522542
Alignment:
| Q |
1 |
cagtagcattggccctatcagtatcaacctccaacttttccttgtcctcctgtaaagccttctcaatagccttgcgacgttcttcaatgacagc |
94 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4522449 |
cagtagcattggccctatcaatatcaacctccaacttttccttgtcctcctgtaaagccttctcaatagccttgcgacgttcttcaatgacagc |
4522542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University