View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4919_high_3 (Length: 516)
Name: NF4919_high_3
Description: NF4919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4919_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 16 - 503
Target Start/End: Complemental strand, 47386554 - 47386047
Alignment:
| Q |
16 |
atcactctaaccttgtacctttatctatatttttgtaagattcttaggtaaggcattcaaaacgtgcggtttgcattctactcaaactcgc----ttagt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| |
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| T |
47386554 |
atcactctaaccttgtacctttatctatatttttgtaagattcttaggtaaggcattcaaaacgtgcggtttgcattctactcaaactcaccgagtgagt |
47386455 |
T |
|
| Q |
112 |
gtttcactattctgctgctacatctgtatcgtatcactgcgctgctcgtgtgtccttcttggaacaaa-----gtaacgataataactaccgacaagact |
206 |
Q |
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| T |
47386454 |
gtttcactattctgctgctacatctgtatcgtatcactgcgctgctcgtgtgtccttcttggaacaaattaaagtaacgataataactaccgacaagact |
47386355 |
T |
|
| Q |
207 |
atagtttatgagacaaacacgggaaattcattaaacaaaacaagatgaatgcacgcacaaaaa---------tatttaaatcttgtatttt--attaata |
295 |
Q |
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| T |
47386354 |
atagtttatgatacaaacacgggaaattcattaaacaaaacaagatgaatgcacgcacaaaaaggacaaaaatatttaaatcttgtattttttattaata |
47386255 |
T |
|
| Q |
296 |
catatataaatagaactgaaaatataaatagttttaggaagtagtagccactgccacccaaagggcttcaccccaatttaaaaattctttgttttcattt |
395 |
Q |
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| T |
47386254 |
catatataaatagaactgaaaatataaatagttttaggaagtagtagccactgccacccaaagggattcaccccaatttaaaaattctttgttttcattt |
47386155 |
T |
|
| Q |
396 |
tcaccaccttctttgcaccttcttgcccactcatacttttccattcttgcgtcactacttttcatcttctcacatgcaacaacttcttctagttccacct |
495 |
Q |
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| T |
47386154 |
tcaccaccttctttgcaccttcttgcccactcatacttttccattcttgcgtcactacttttcatcttctcacatgcaacaacttcctctagttccacct |
47386055 |
T |
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| Q |
496 |
tctctgct |
503 |
Q |
| |
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|||||||| |
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| T |
47386054 |
tctctgct |
47386047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 220 - 411
Target Start/End: Original strand, 47372630 - 47372820
Alignment:
| Q |
220 |
caaacacgggaaattcattaaacaaaacaagatgaatgcacgcacaaaaatattta-aatcttgtattttattaatacatatataaatagaactgaaaat |
318 |
Q |
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|||||||||||||||||||||||||| || | ||||||||| | ||| | || | |||||||| ||||||||||||| ||| |||||| |||||| |
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| T |
47372630 |
caaacacgggaaattcattaaacaaagcaggttgaatgcacaaaaaaacaaatacataatcttgttttttattaatacagata--aatagatgggaaaat |
47372727 |
T |
|
| Q |
319 |
ataaatagttttaggaagtagtagccactgccacccaaag-----ggcttcaccccaatttaaaaattctttgttttcattttcaccaccttctttgc |
411 |
Q |
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|||||||||||||||||||||||||||| || |||| | |||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
47372728 |
ataaatagttttaggaagtagtagccac-----ccaaaagttcacgttctcaccccaatttaacgattcattgttttcattttcaccaccttctttgc |
47372820 |
T |
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