View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4919_high_6 (Length: 466)
Name: NF4919_high_6
Description: NF4919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4919_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Complemental strand, 36000751 - 36000308
Alignment:
| Q |
18 |
gcgagatgaccaacaataacaatttattcccccaacaaagaggaagaggacttgaataatagatatttgcatgaatgtttcaaatcggtaagaatcttca |
117 |
Q |
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| T |
36000751 |
gcgagatgaccaacaataacaatttattcccctaacaaagaggaagaggacttgaataatagatatttgcatgaatgtttcaaatcggtaagaatcttca |
36000652 |
T |
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| Q |
118 |
cccta----ttcctaatttatttnnnnnnncaa----tttaatcatttcaatgaagaaaataattcttaagaaaatactcatgacagattctaaaaaatg |
209 |
Q |
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| T |
36000651 |
ccctagctattcctaatttatttaaaaaaaaaaaaaatttaatcatttcaatgaagaaaataattcttaagaaaatactcatgacagattctaaaaaatg |
36000552 |
T |
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| Q |
210 |
atgtcagatagataaattgcattaacattgtgttgaaacaatgtattggacaggtcttttgaagcacctgctactgctaaaagagtcaaaatatctattt |
309 |
Q |
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| T |
36000551 |
atgtcagatagataaattgcattaacattgtgttgaaacaatgtattggacaggtcttttgaagcacctgctactgctaaaagaatcaaaatatctattt |
36000452 |
T |
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| Q |
310 |
ctcttgtttctcaagccgaacgtcaaggcagcatggtaacattcatttatcaaaatcccttgttgcagtggatcattagtaatataaagttgcacgcttg |
409 |
Q |
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| T |
36000451 |
ctcttgtttctcaagccgaacgtcaaggcagcatggtaacattcatttatcaatatcccttgttgcagtggatcattagtaatataaagttgcacgcttg |
36000352 |
T |
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| Q |
410 |
tagtaaattcatcatttcaatgtgaaagtgcaacggtaaaactg |
453 |
Q |
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| T |
36000351 |
tagtaaattcatcatttcaatgtgaaagtgcaatggtaaaactg |
36000308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 159 - 325
Target Start/End: Complemental strand, 36021750 - 36021586
Alignment:
| Q |
159 |
aatgaagaaaataattctta-agaaaatactcatgacagattctaaaaaatgatgtcagatagataaattgcattaacattgtgttgaaacaatgtattg |
257 |
Q |
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|||||||||| ||||||||| | ||||||||| ||| | ||||| ||||| |||||| ||| ||||| | ||||||||||||||||||| ||||| |
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| T |
36021750 |
aatgaagaaattaattcttacaaaaaatactcgtgatatattctcaaaaaccatgtcaaata----aattgtaataacattgtgttgaaacaacatattg |
36021655 |
T |
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| Q |
258 |
gacaggt-cttt--tgaagcacctgctactgctaaaagagtcaaaatatctatttctcttgtttctcaagc |
325 |
Q |
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| T |
36021654 |
gacaggtactttgttgaagca--tgctactgctagaagagtcaaaaattctatttatcttgtttctcaagc |
36021586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 36021861 - 36021803
Alignment:
| Q |
63 |
gaggacttgaataatagatatttgcatgaatgtttcaaatcggtaagaatcttcaccct |
121 |
Q |
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| T |
36021861 |
gaggacttgaataataaatctttgcatgaacgttcaaaatcggtatggatcttcaccct |
36021803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 36016500 - 36016448
Alignment:
| Q |
218 |
tagataaattgcattaacattgtgttgaaacaatgtattggacaggtcttttg |
270 |
Q |
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| T |
36016500 |
tagataaattgcaatagcattgtgttgaaacaacacattggacatgtcttttg |
36016448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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