View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4919_low_11 (Length: 334)
Name: NF4919_low_11
Description: NF4919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4919_low_11 |
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| [»] scaffold0095 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 39414125 - 39414448
Alignment:
| Q |
1 |
ataaatataattgagcaagagagaagttattattaattaaagtgacacaccatttaacaaagtccctaagttaaagttgaggcaatgacacaacttggca |
100 |
Q |
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| T |
39414125 |
ataaatataattgagcaagagagaagttattattaattaaagtgacacaccatttaacaaagtccctaagttaaagttgaggcaatgacacaacttggaa |
39414224 |
T |
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| Q |
101 |
tttgataatttgacaggctctgggatcatatgccactacttcatcagataagagtgataagtttgatgccagtgtccctgagaatgatgtctcacttgat |
200 |
Q |
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| T |
39414225 |
tttgataatttgacaggctctgggatcatatgccactacttcatcagataagagtgataagtttgatgccagtgtccctgagaatgatgtctcacttgat |
39414324 |
T |
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| Q |
201 |
agcccaaccattaatcagttcgagacaatgatgtaggagatcaacacacacaaagaggagctagggataagttttcttttatgtgattttataaaaggga |
300 |
Q |
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| T |
39414325 |
agcccaaccattaatcagttcgagacaatgatgtaggagatcaacacacacaaggaggagctagggataagttttcttttatgtgattttataaaaggga |
39414424 |
T |
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| Q |
301 |
taagtccccccttctttggttcat |
324 |
Q |
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| T |
39414425 |
taagtccccccttctttggttcat |
39414448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 41324 - 41594
Alignment:
| Q |
1 |
ataaatataattgagcaagagagaagttattattaattaaagtgacacaccatttaacaaagtccctaagttaaagttgaggcaatgacacaacttggca |
100 |
Q |
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| T |
41324 |
ataaatataattgagcaagagagaagttattattaattaaagtgacacaccatttaacaaagtccctaagttaaagttgaggcaatgacacaacttggaa |
41423 |
T |
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| Q |
101 |
tttgataatttgacaggctctgggatcatatgccactacttcatcagataagagtgataagtttgatgccagtgtccctgagaatgatgtctcacttgat |
200 |
Q |
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| T |
41424 |
tttgataatttgacaggctctgggatcatatcccactacttcatcagataagagtgataagtttgatgccagtgtccctgagaatgatgtctcacttgat |
41523 |
T |
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| Q |
201 |
agcccaaccattaatcagttcgagacaatgatgtaggagatcaacacacacaaagaggagctagggataag |
271 |
Q |
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| T |
41524 |
agcccaaccattaatcagttcgagacaatgatgtaggagatcaacacacacaaggaggagctagggataag |
41594 |
T |
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