View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4919_low_14 (Length: 284)
Name: NF4919_low_14
Description: NF4919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4919_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 156 - 267
Target Start/End: Complemental strand, 3702317 - 3702206
Alignment:
| Q |
156 |
tgaattctgaaggtttgatatttatataatcaaaagggctattttgtattatttttccaacaaatattaaatatcattactctccttggaaagttttgat |
255 |
Q |
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| T |
3702317 |
tgaattctgaaggtttgatatttatataatcaaaagggctattttgtattatttttccaacaaatattaaatatcattactctccttggaaagttttgat |
3702218 |
T |
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| Q |
256 |
ttctcttctgtg |
267 |
Q |
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|||||||||||| |
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| T |
3702217 |
ttctcttctgtg |
3702206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 162
Target Start/End: Complemental strand, 3702446 - 3702367
Alignment:
| Q |
83 |
attgaggttaatggttcataagtttctgtgtaaactcattatattgttagatttttggtatttgactgtgttttgaattc |
162 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3702446 |
attgaggttaatggttcataagtttctgtgtaaactcattatattgttagatttttggtatttgattgtgttttgaattc |
3702367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 3702508 - 3702474
Alignment:
| Q |
20 |
caaatggtacaatcacttcctctacaagttcatca |
54 |
Q |
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| T |
3702508 |
caaatggtacaatcacttcctctacaagttcatca |
3702474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 156 - 267
Target Start/End: Original strand, 6601226 - 6601337
Alignment:
| Q |
156 |
tgaattctgaaggtttgatatttatataatcaaaagggctattttgtattatttttccaacaaatattaaatatcattactctccttggaaagttttgat |
255 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
6601226 |
tgaattctgaaggtttaatatttatataatcaaaagggctattttgtattatttttcacacaagtattaaatatcattactctccttggaaagttttgat |
6601325 |
T |
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| Q |
256 |
ttctcttctgtg |
267 |
Q |
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|||||||||||| |
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| T |
6601326 |
ttctcttctgtg |
6601337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 6601097 - 6601176
Alignment:
| Q |
83 |
attgaggttaatggttcataagtttctgtgtaaactcattatattgttagatttttggtatttgactgtgttttgaattc |
162 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6601097 |
attgaggttagtggatcataagtttctgtgtaaactcattatattgttagatttttggtatttgactgtgttttgaattc |
6601176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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