View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4919_low_15 (Length: 273)
Name: NF4919_low_15
Description: NF4919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4919_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 43144264 - 43144506
Alignment:
| Q |
13 |
aaaataatagtagtaaaattatgaatagttggactcaaataattaataatagctttttatttgagtatgggttgtaattaaggatacgttaattagtgat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43144264 |
aaaataatagtagtaaaattatgaatagttggactcaaataattaataatagctttttatttgagtatgggttgtaattaaggatacgttaattagtgat |
43144363 |
T |
|
| Q |
113 |
taaatgaagttttgggtaatttataatagtagacgtgattaatttggcagaaacaaagttggatgatgacagaacaacacgatgcgtgcgacatgaagta |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43144364 |
taaatgaagttttgggtaatttataatagtagacgtgattaatttggcaggaaaaacgttggatgatgacagaacaacacgatgcgtgcgacatgaagta |
43144463 |
T |
|
| Q |
213 |
tgtgtttcatgtcacactttagtatattctggaaagagtgtgg |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43144464 |
tgtgtttcatgtcacactttagtatattctgaaaagagtgtgg |
43144506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University