View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4919_low_18 (Length: 208)
Name: NF4919_low_18
Description: NF4919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4919_low_18 |
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| [»] scaffold0095 (2 HSPs) |
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Alignment Details
Target: scaffold0095 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 40824 - 40751
Alignment:
| Q |
16 |
aagaatatacatttgcacgatcggtgacagcaaccgtgtgtctccatccacttgacatctgaactactttctac |
89 |
Q |
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| T |
40824 |
aagaatatacatttgcacgatcggtgacagcaaccgtgtgtctccatccacttgacatctgaactactttctac |
40751 |
T |
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Target: scaffold0095; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 40687 - 40651
Alignment:
| Q |
153 |
gttctagaagtttcaagtacctgagcatgaggaaagt |
189 |
Q |
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| T |
40687 |
gttctagaagtttctagtacctgagcatgaggaaagt |
40651 |
T |
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Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 39413625 - 39413552
Alignment:
| Q |
16 |
aagaatatacatttgcacgatcggtgacagcaaccgtgtgtctccatccacttgacatctgaactactttctac |
89 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39413625 |
aagaatatacatttgcacgatcggtgacagcaaccgtgtgtctccatccacttgacatctgaactactttctac |
39413552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 39413488 - 39413452
Alignment:
| Q |
153 |
gttctagaagtttcaagtacctgagcatgaggaaagt |
189 |
Q |
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|||||||||||||| |||||||||||||||||||||| |
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| T |
39413488 |
gttctagaagtttctagtacctgagcatgaggaaagt |
39413452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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