View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4919_low_19 (Length: 204)
Name: NF4919_low_19
Description: NF4919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4919_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 241763 - 241590
Alignment:
| Q |
18 |
gccctcgttgctaaagtatgtctcatatctttagaagtgtgcatgtatcaaaacgaaacaaattgtctgacagaacacatcggaacggggcaaaatcgag |
117 |
Q |
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| T |
241763 |
gccctcgttgctaaaatatgtctcatatatttagaagtgtgcatgtatcaaaacgaaacaaattgtctgacagaacacatcagaacggggcaaaatcgag |
241664 |
T |
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| Q |
118 |
tgnnnnnnngatatgtatacaagagtaaaagagtatacctaagtagctcttgacagcttgcatgtaagtataat |
191 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
241663 |
tgtttttttcatatgtatacaagagtaaaagagtatacctaagtagctcttgacagcttgcatgtaagtataat |
241590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 223507 - 223571
Alignment:
| Q |
127 |
gatatgtatacaagagtaaaagagtatacctaagtagctcttgacagcttgcatgtaagtataat |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
223507 |
gatatgtatacaagagtaaaagagtatacctaagtagctcttgacagcttgcatgtaagtataat |
223571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 223439 - 223482
Alignment:
| Q |
18 |
gccctcgttgctaaagtatgtctcatatctttagaagtgtgcat |
61 |
Q |
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| T |
223439 |
gccctcgttgctaaaatatgtctcatatatttagaagtgtgcat |
223482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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