View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4919_low_5 (Length: 487)

Name: NF4919_low_5
Description: NF4919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4919_low_5
NF4919_low_5
[»] chr8 (1 HSPs)
chr8 (17-474)||(16908549-16909006)
[»] chr1 (1 HSPs)
chr1 (17-474)||(14869659-14870110)
[»] chr5 (3 HSPs)
chr5 (35-390)||(5994814-5995166)
chr5 (276-395)||(17572660-17572779)
chr5 (169-395)||(17619933-17620159)
[»] chr7 (6 HSPs)
chr7 (276-415)||(14710257-14710396)
chr7 (159-327)||(26204405-26204570)
chr7 (269-331)||(26260388-26260450)
chr7 (273-327)||(26224043-26224097)
chr7 (169-230)||(14710156-14710217)
chr7 (269-331)||(26227488-26227550)
[»] chr6 (2 HSPs)
chr6 (305-412)||(12613434-12613541)
chr6 (169-230)||(12613610-12613671)


Alignment Details
Target: chr8 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 17 - 474
Target Start/End: Original strand, 16908549 - 16909006
Alignment:
Q  17 acacatcaaccaacaatctctcattgaaaaactgttcagcaaataatggccaagtagccaatggtaaacctgcatttacactttccataatagtgttcca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16908549 acacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaagtagccaatggtaaacctgcatttacactttccataatagtgttcca 16908648  T
Q  117 cccacaatgagtcaccacagctccaactgcaccatgctctagtatcagaagctgtggtgcccaaccccatatcaaatagcctttgtttctttccttcatt 216  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16908649 cccacaatgagtcacaacagctccaactgcaccatgctctagtatcagaagctgtggtgcccaaccccatatcaaatagcctttgtttctttctttcatt 16908748  T
Q  217 ctcttctcaaactcactcaaaaaaccatcatcaccgtcttcggcatcttcgatttttctaacaacccaaatgaaatcatggccagaatcttcaagtgcat 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16908749 ctcttctcaaactcactcaaaaaaccatcatcaccgtcttcggcatcttcgattttcctaacaacccaaatgaaatcatggccagaatcttcaagtgcat 16908848  T
Q  317 gagctatttcaacaagttgaggagtagggaacttgttcatgctcccaaaactaacatagagaacagaatcatctttctttgaatcaagccacttaagcac 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  16908849 gagctatttcaacaagttgaggagtagggaacttgttcatgctcccaaaactaacataaagaacagaatcatatttctttgaatcaagccacttaagcac 16908948  T
Q  417 cccttcttcttcatcttcttctttaccatgtcctctaccagctttatctgaatcatct 474  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16908949 cccttcttcttcatcttcttctttaccatgtcctctaccagctttatctgaatcatct 16909006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 474
Target Start/End: Complemental strand, 14870110 - 14869659
Alignment:
Q  17 acacatcaaccaacaatctctcattgaaaaactgttcagcaaataatggccaagtagccaatggtaaacctgcatttacactttccataatagtgttcca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||  |||||||||||||||||||||||||||||||||||    
T  14870110 acacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaagttgccaatgacaaacctgcatttacactttccataatagtgttcca 14870011  T
Q  117 cccacaatgagtcaccacagctccaactgcaccatgctctagtatcagaagctgtggtgcccaaccccatatcaaatagcctttgtttctttccttcatt 216  Q
     ||||| ||||||||||| |||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14870010 gccacagtgagtcaccactgctccaactgcagcatgctctagtatcagcagttgtggtgcccaaccccatatcaaatagcctttgttgctttccttcatt 14869911  T
Q  217 ctcttctcaaactcactcaaaaaaccatcatcaccgtcttcggcatcttcgatttttctaacaacccaaatgaaatcatggccagaatcttcaagtgcat 316  Q
    ||||||||||||||  | ||||||      ||||| |||||  ||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  14869910 ctcttctcaaactccgtaaaaaaa------tcaccatcttcaacatcttcaattttcctaacaacccaaatgaaatcatggccagaatgttcaagtgcat 14869817  T
Q  317 gagctatttcaacaagttgaggagtagggaacttgttcatgctcccaaaactaacatagagaacagaatcatctttctttgaatcaagccacttaagcac 416  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14869816 gagctatttcaacaagctgaggagtagggaacttgttcatgctcccaaaactaacatagagaacagaatcatctttcttagaatcaagccacttaagcac 14869717  T
Q  417 cccttcttcttcatcttcttctttaccatgtcctctaccagctttatctgaatcatct 474  Q
     ||||| ||||||||||||||||||||||| |||||||| |||||||| |||||||||    
T  14869716 tccttcatcttcatcttcttctttaccatgccctctacccgctttatccgaatcatct 14869659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 9e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 35 - 390
Target Start/End: Original strand, 5994814 - 5995166
Alignment:
Q  35 tctcattgaaaaactgttcagcaaataatggccaagtagccaatggtaaacctgcatttacactttccataatagtgttccacccacaatgagtcaccac 134  Q
    ||||||||||||| |||||||||||||| ||||| ||  |   |||||| ||  |||| |||||||| | || ||||||||| ||||||||| |||| |     
T  5994814 tctcattgaaaaaatgttcagcaaataaaggccatgtcactgttggtaacccaacattcacactttcaacaacagtgttccaaccacaatgactcactaa 5994913  T
Q  135 agctccaactgcaccatgctctagtatcagaagctgtggtgcccaaccccatatcaaatagcctttgtttctttccttcattctcttctcaaactcactc 234  Q
      |||||| ||||  || ||| ||||||| ||||||||||||||| ||||| ||||||||||||||    ||||| |||||| |||||||||||||  ||    
T  5994914 ccctccaattgcatgattctcaagtatcaaaagctgtggtgcccatccccaaatcaaatagccttttccactttctttcattttcttctcaaactc-ttc 5995012  T
Q  235 aaaaaaccatcatcaccgtcttcggcatcttcgatttttctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaagtt 334  Q
    || |||  | || |||| |||||    |||||  |||||||||||||||||||||||| ||| || |||| |||||||||||| || |||||||| |  |    
T  5995013 aagaaa--aacaccaccttcttcattttcttcattttttctaacaacccaaatgaaattatgacctgaattttcaagtgcatgtgcaatttcaactaact 5995110  T
Q  335 gaggagtagggaacttgttcatgctcccaaaactaacatagagaacagaatcatct 390  Q
    ||| |  ||| || || ||||| || |||||||| ||||| | ||||||| |||||    
T  5995111 gagaataaggaaatttattcatactgccaaaacttacatataaaacagaaccatct 5995166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 276 - 395
Target Start/End: Original strand, 17572660 - 17572779
Alignment:
Q  276 aacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaagttgaggagtagggaacttgttcatgctcccaaaactaacatag 375  Q
    |||||||||||||||||||||||  |||  |||||||||||||||||||||||  |||||||  || ||||||||||| | ||| |||||||| ||||||    
T  17572660 aacaacccaaatgaaatcatggcttgaagtttcaagtgcatgagctatttcaatgagttgagatgttgggaacttgtttaagctgccaaaacttacatag 17572759  T
Q  376 agaacagaatcatctttctt 395  Q
    ||||||||||  ||||||||    
T  17572760 agaacagaattctctttctt 17572779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 169 - 395
Target Start/End: Complemental strand, 17620159 - 17619933
Alignment:
Q  169 tgtggtgcccaaccccatatcaaatagcctttgtttctttccttcattctcttctcaaactcactcaaaaaaccatcatcaccgtcttcggcatcttcga 268  Q
    ||||| |||||||||||||||||||| || |||||  |||| |||||||| |||||||||||   || |||||| |||||||| ||||   ||| |   |    
T  17620159 tgtggggcccaaccccatatcaaataacccttgttgttttctttcattcttttctcaaactcctccataaaaccttcatcaccttctttttcat-taata 17620061  T
Q  269 ttttt-ctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaagttgaggagtagggaacttgttcatgctcccaaaac 367  Q
    || || | ||||||||||||||||| |||||  ||| ||||||||||||||||||||||||  |||||||  |  ||||||||||| | ||| |||||||    
T  17620060 ttcttacgaacaacccaaatgaaattatggcttgaagcttcaagtgcatgagctatttcaatgagttgagatggtgggaacttgtttaagctgccaaaac 17619961  T
Q  368 taacatagagaacagaatcatctttctt 395  Q
    | ||||||| ||||||||  ||||||||    
T  17619960 ttacatagataacagaattctctttctt 17619933  T

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Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 276 - 415
Target Start/End: Original strand, 14710257 - 14710396
Alignment:
Q  276 aacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaagttgaggagtagggaacttgttcatgctcccaaaactaacatag 375  Q
    |||||||||||||||||||||||  ||| ||||||||||||||||||||||||  |||||||  || ||||||||||| | ||| |||||||| | ||||    
T  14710257 aacaacccaaatgaaatcatggcttgaagcttcaagtgcatgagctatttcaatgagttgagatgttgggaacttgtttaagctgccaaaacttagatag 14710356  T
Q  376 agaacagaatcatctttctttgaatcaagccacttaagca 415  Q
    ||||||||||  |||||||| || | |||||| |||||||    
T  14710357 agaacagaattctctttcttagagttaagccatttaagca 14710396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 159 - 327
Target Start/End: Complemental strand, 26204570 - 26204405
Alignment:
Q  159 tatcagaagctgtggtgcccaaccccatatcaaatagcctttgtttctttccttcattctcttctcaaactcactcaaaaaaccatcatcaccgtcttcg 258  Q
    ||||||||||||||| ||||||  |||||| | |||||| || || ||||| ||||| || |||||||| ||  ||| |||||| || ||||| || ||     
T  26204570 tatcagaagctgtggggcccaattccatatgatatagccctttttgctttctttcatccttttctcaaaatctatcagaaaaccttcttcaccatcatct 26204471  T
Q  259 gcatcttcgatttttctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttca 327  Q
      ||| |   ||| |||||||||||||||||||| ||| ||||||| ||||||  ||||||||||||||    
T  26204470 ttatcct---tttctctaacaacccaaatgaaattatgaccagaattttcaagaccatgagctatttca 26204405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 269 - 331
Target Start/End: Complemental strand, 26260450 - 26260388
Alignment:
Q  269 tttttctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaa 331  Q
    |||| ||||||||||||||||||| ||| || |||| ||||||| ||||||||||||||||||    
T  26260450 ttttcctaacaacccaaatgaaattatgacctgaattttcaagtccatgagctatttcaacaa 26260388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 26224097 - 26224043
Alignment:
Q  273 tctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttca 327  Q
    |||||||||||||||||||| ||| ||||||| ||||||  ||||||||||||||    
T  26224097 tctaacaacccaaatgaaattatgaccagaattttcaagaccatgagctatttca 26224043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 14710156 - 14710217
Alignment:
Q  169 tgtggtgcccaaccccatatcaaatagcctttgtttctttccttcattctcttctcaaactc 230  Q
    |||||||||||||||||||||||||| || || || ||||| |||| |||||| ||||||||    
T  14710156 tgtggtgcccaaccccatatcaaataacccttattgctttctttcactctcttttcaaactc 14710217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 331
Target Start/End: Complemental strand, 26227550 - 26227488
Alignment:
Q  269 tttttctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaa 331  Q
    |||| ||||||||||||||||||| ||| || |||| ||||||  ||||||||||||| ||||    
T  26227550 ttttcctaacaacccaaatgaaattatgacctgaattttcaagaccatgagctatttctacaa 26227488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 305 - 412
Target Start/End: Complemental strand, 12613541 - 12613434
Alignment:
Q  305 cttcaagtgcatgagctatttcaacaagttgaggagtagggaacttgttcatgctcccaaaactaacatagagaacagaatcatctttctttgaatcaag 404  Q
    ||||||||||||||||||||||||  |||||||  |  ||||||||||||||||| |||||||| ||||||||||||||||  |||||||| |||| |||    
T  12613541 cttcaagtgcatgagctatttcaatgagttgagatgatgggaacttgttcatgctaccaaaacttacatagagaacagaattctctttcttggaattaag 12613442  T
Q  405 ccacttaa 412  Q
    ||| ||||    
T  12613441 ccatttaa 12613434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 12613671 - 12613610
Alignment:
Q  169 tgtggtgcccaaccccatatcaaatagcctttgtttctttccttcattctcttctcaaactc 230  Q
    |||||||||||||||||||||||||| || || || ||||| |||| ||| |||||||||||    
T  12613671 tgtggtgcccaaccccatatcaaataacccttattgctttctttcactcttttctcaaactc 12613610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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