View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4919_low_6 (Length: 478)
Name: NF4919_low_6
Description: NF4919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4919_low_6 |
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| [»] scaffold0095 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: scaffold0095 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Complemental strand, 41304 - 40827
Alignment:
| Q |
1 |
ggtttatatctagtgtgtactaaaagtctataacaatagacttacagtttcatttggaacaaccgcatatctctctgataaggaggcaaatgatttccct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41304 |
ggtttatatctagtgtgtactaaaagtctataacaatagacttacagtttcatttggaacaaccgcatatctctctgataaggaggcaaatgatttccct |
41205 |
T |
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| Q |
101 |
gttcaagggaaaatgaaacatccacaatcatgttttaatttttcaacagagaaaaatcgattctaaattgaaccgccaaatggtataaatcagtaatgtg |
200 |
Q |
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| T |
41204 |
gttcaagggaaaatgaaacatccacaatcatgttttaatttttcaacagagaaaaatcgattctaaattgaaccgccaaatggtataaatcagtaatgtg |
41105 |
T |
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| Q |
201 |
tacaaaaaaggaacacaatcacaaaaatgagcccaatcagagaacctggtaatggatactttgaggattctatgtgctgctcactacatccatcaacacc |
300 |
Q |
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| T |
41104 |
tacaaaaaaggaacacaatcacaaatatgagcccagtcagggaacctggtaatggatagtttgaggattctatgtgctgctcactacatccatcaacact |
41005 |
T |
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| Q |
301 |
gaaggcatcaataatcgttggaacgttcctgcaaatcccagacagatcacattaatactcaaaacttgtaaaatgttgtaacaattatgcaaggctatat |
400 |
Q |
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| T |
41004 |
gaaggcatcaataatcgtcggaacgttcctgcaaatcccagacagatcacattaatactcaaaacttgtaaaatgttgtaacaattatgcaaggctatat |
40905 |
T |
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| Q |
401 |
tcaatatatggtttcttgtgcatgaagttaccggtctttggtgtctccatgcccaagttgtccatttgcacctcttcc |
478 |
Q |
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| T |
40904 |
tcaatatatggtttcttgtgcatgaagttaccggtctttggtgtctccatgcccaagttgtccatttgcacctcttcc |
40827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Complemental strand, 39414105 - 39413628
Alignment:
| Q |
1 |
ggtttatatctagtgtgtactaaaagtctataacaatagacttacagtttcatttggaacaaccgcatatctctctgataaggaggcaaatgatttccct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39414105 |
ggtttatatctagtgtgtactaaaagtctataacaatagacttacagtttcatttggaacaaccgcatatctctctgataaggaggcaaatgatttccct |
39414006 |
T |
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| Q |
101 |
gttcaagggaaaatgaaacatccacaatcatgttttaatttttcaacagagaaaaatcgattctaaattgaaccgccaaatggtataaatcagtaatgtg |
200 |
Q |
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| T |
39414005 |
gttcaagggaaaatgaaacatccacaatcatgttttaatttttcaacagagaaaaatcgattctaaattgaaccgccaaatggtataaatcagtaatgtg |
39413906 |
T |
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| Q |
201 |
tacaaaaaaggaacacaatcacaaaaatgagcccaatcagagaacctggtaatggatactttgaggattctatgtgctgctcactacatccatcaacacc |
300 |
Q |
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| T |
39413905 |
tacaaaaaaggaacacaatcacaaatatgagcccagtcagggaacctggtaatggatagtttgaggattctatgtgctgctcactacatccatcaacact |
39413806 |
T |
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| Q |
301 |
gaaggcatcaataatcgttggaacgttcctgcaaatcccagacagatcacattaatactcaaaacttgtaaaatgttgtaacaattatgcaaggctatat |
400 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39413805 |
gaaggcatcaataatcgtcggaacgttcctgcaaatcccagacagatcacattaatactcaaaacttgtaaaatgttgtaacaattatgcaaggctatat |
39413706 |
T |
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| Q |
401 |
tcaatatatggtttcttgtgcatgaagttaccggtctttggtgtctccatgcccaagttgtccatttgcacctcttcc |
478 |
Q |
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| T |
39413705 |
tcaatatatggtttcttgtgcatgaagttaccggtctttggtgtctccatgcccaagttgtccatttgcacctcttcc |
39413628 |
T |
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