View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4919_low_8 (Length: 362)

Name: NF4919_low_8
Description: NF4919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4919_low_8
NF4919_low_8
[»] chr4 (20 HSPs)
chr4 (1-346)||(30032570-30032917)
chr4 (1-218)||(30048816-30049035)
chr4 (1-218)||(30063157-30063376)
chr4 (1-85)||(30228955-30229039)
chr4 (268-341)||(20610763-20610837)
chr4 (246-346)||(4419678-4419779)
chr4 (246-333)||(56865-56953)
chr4 (268-341)||(24039911-24039982)
chr4 (1-80)||(30220032-30220112)
chr4 (102-208)||(30229033-30229135)
chr4 (246-341)||(54264930-54265026)
chr4 (287-346)||(55677148-55677208)
chr4 (270-344)||(35230289-35230364)
chr4 (268-341)||(12585556-12585630)
chr4 (268-341)||(33359841-33359915)
chr4 (268-314)||(42432032-42432078)
chr4 (268-341)||(49039442-49039516)
chr4 (270-346)||(49743388-49743465)
chr4 (270-314)||(36008301-36008345)
chr4 (270-314)||(56531261-56531305)
[»] chr2 (18 HSPs)
chr2 (268-344)||(4529757-4529834)
chr2 (268-341)||(14307691-14307765)
chr2 (268-344)||(36413784-36413861)
chr2 (268-346)||(37065426-37065505)
chr2 (269-346)||(18065279-18065357)
chr2 (268-341)||(23663995-23664067)
chr2 (295-344)||(44240084-44240133)
chr2 (246-341)||(39334878-39334974)
chr2 (268-341)||(10602029-10602104)
chr2 (268-341)||(1244593-1244667)
chr2 (288-341)||(12206542-12206596)
chr2 (268-341)||(25406647-25406721)
chr2 (268-346)||(26975291-26975369)
chr2 (288-341)||(32256180-32256234)
chr2 (268-341)||(37123210-37123284)
chr2 (270-343)||(407505-407578)
chr2 (273-313)||(10767016-10767056)
chr2 (270-314)||(11133102-11133146)
[»] chr3 (19 HSPs)
chr3 (246-346)||(28951868-28951969)
chr3 (246-341)||(24160525-24160621)
chr3 (268-346)||(6054217-6054296)
chr3 (269-341)||(32080080-32080153)
chr3 (270-346)||(36842188-36842265)
chr3 (270-333)||(42665930-42665994)
chr3 (268-347)||(55318041-55318121)
chr3 (246-341)||(794006-794101)
chr3 (246-346)||(3461715-3461817)
chr3 (268-346)||(4045626-4045705)
chr3 (272-341)||(22432908-22432978)
chr3 (268-341)||(23237386-23237460)
chr3 (268-341)||(51017814-51017887)
chr3 (268-344)||(31902200-31902276)
chr3 (268-341)||(44592024-44592097)
chr3 (282-341)||(21248987-21249047)
chr3 (268-323)||(26583125-26583181)
chr3 (270-314)||(32508819-32508863)
chr3 (270-314)||(42271038-42271082)
[»] chr5 (10 HSPs)
chr5 (268-341)||(28537159-28537233)
chr5 (269-341)||(27006365-27006438)
chr5 (268-344)||(41405082-41405159)
chr5 (268-343)||(32252914-32252990)
chr5 (268-341)||(31556842-31556916)
chr5 (268-341)||(38040290-38040363)
chr5 (246-346)||(42553133-42553233)
chr5 (267-341)||(42260717-42260792)
chr5 (295-341)||(31280377-31280423)
chr5 (270-314)||(18872547-18872591)
[»] chr1 (21 HSPs)
chr1 (268-341)||(9768806-9768880)
chr1 (250-341)||(2903024-2903116)
chr1 (274-345)||(24889170-24889242)
chr1 (268-341)||(12553217-12553292)
chr1 (247-346)||(18646691-18646789)
chr1 (268-341)||(18003840-18003914)
chr1 (288-341)||(41677104-41677158)
chr1 (268-341)||(50199473-50199547)
chr1 (270-346)||(23750176-23750253)
chr1 (282-341)||(33844655-33844715)
chr1 (282-341)||(33949263-33949323)
chr1 (268-307)||(42908795-42908834)
chr1 (268-341)||(1721164-1721238)
chr1 (268-341)||(3341733-3341807)
chr1 (268-341)||(11238025-11238099)
chr1 (268-341)||(40454169-40454242)
chr1 (246-339)||(52961081-52961175)
chr1 (268-346)||(7015678-7015758)
chr1 (273-341)||(41182803-41182871)
chr1 (270-314)||(11405482-11405526)
chr1 (270-341)||(31965538-31965610)
[»] chr7 (12 HSPs)
chr7 (268-346)||(44409225-44409303)
chr7 (268-341)||(10020466-10020540)
chr7 (268-338)||(35195867-35195938)
chr7 (270-347)||(7162659-7162737)
chr7 (270-327)||(24304294-24304352)
chr7 (269-341)||(39524713-39524785)
chr7 (295-346)||(3246481-3246533)
chr7 (268-346)||(11808062-11808142)
chr7 (246-314)||(43635590-43635658)
chr7 (268-346)||(16814721-16814800)
chr7 (248-336)||(24427367-24427456)
chr7 (250-341)||(23799306-23799398)
[»] chr6 (8 HSPs)
chr6 (246-341)||(14949016-14949113)
chr6 (268-314)||(7374075-7374121)
chr6 (268-341)||(30833041-30833115)
chr6 (268-341)||(34524899-34524973)
chr6 (268-341)||(1488112-1488186)
chr6 (268-341)||(19680245-19680319)
chr6 (246-291)||(14339775-14339820)
chr6 (246-341)||(30668181-30668277)
[»] chr8 (8 HSPs)
chr8 (276-332)||(574257-574313)
chr8 (246-341)||(7345430-7345526)
chr8 (246-341)||(25470843-25470939)
chr8 (268-341)||(22847259-22847333)
chr8 (270-327)||(35301174-35301232)
chr8 (270-303)||(33570465-33570498)
chr8 (270-318)||(13106391-13106439)
chr8 (270-314)||(43468730-43468774)
[»] scaffold0168 (1 HSPs)
scaffold0168 (268-341)||(34030-34104)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 30032570 - 30032917
Alignment:
Q  1 tctttaagtgttcttcaggcttcacttcgacctttcgccatctcatcttaccctctctgtcttttacctgtgcaaattaattaatagtatcagaataaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  30032570 tctttaagtgttcttcaggcttcacttcgacctttcgccatctcatcttaccctctttgtcttttacctttgcaaattaattaatagtatcagaataaaa 30032669  T
Q  101 taattaatgataataaaatgccaattttgattattgaagaagactagattcgat-gaaattgactagccttaatatgcgttatattaattaaaatttggt 199  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30032670 taattaatgattataaaatgccaattttgattattgaagaagactagattcgatagaaattgactagccttaatatgcgttatattaattaaaatttggt 30032769  T
Q  200 aggtaaaatataagtaatagtagtgataaataaaatacatcttcgggagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttc 299  Q
    ||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||||||| ||||||||||||| |||||||| |||||||||    
T  30032770 aggtaaaatgtaagtaatagtagtgattaataaaatacatctccgtgagcataactcagctgccaaagacatgcattgttatatgcatggatcggggttc 30032869  T
Q  300 gaactccgaacacccaattattcacttt-gaaaaaggtgaattttaac 346  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||    
T  30032870 gaactccgaacacccaattattcactttaaaaaaaggtgaattttaac 30032917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 30048816 - 30049035
Alignment:
Q  1 tctttaagtgttcttcaggcttcacttcgacctttcgccatctcatcttaccctctctgtcttttacctgtgcaaattaattaatagtatcagaat-aaa 99  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||| |||    
T  30048816 tctttaagtgttcttcaggcttcacttcgaccttttgccatctcatctcaccctctttgtcttttacctgtgcaaattaattaatagtatcaaaataaaa 30048915  T
Q  100 ataattaatgataataaaatgccaattttgattattgaagaagactagattcgat-gaaattgactagccttaatatgcgttatattaattaaaatttgg 198  Q
    ||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30048916 ataattagtgataataaaaggtcaattttgattattgaagaagactagattcgatagaaattgactagccttaatatgcgttatattaattaaaatttgg 30049015  T
Q  199 taggtaaaatataagtaata 218  Q
    ||||||| || |||||||||    
T  30049016 taggtaacatgtaagtaata 30049035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 30063157 - 30063376
Alignment:
Q  1 tctttaagtgttcttcaggcttcacttcgacctttcgccatctcatcttaccctctctgtcttttacctgtgcaaattaattaatagtatcagaat-aaa 99  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||| |||    
T  30063157 tctttaagtgttcttcaggcttcacttcgaccttttgccatctcatctcaccctctttgtcttttacctgtgcaaattaattaatagtatcaaaataaaa 30063256  T
Q  100 ataattaatgataataaaatgccaattttgattattgaagaagactagattcgat-gaaattgactagccttaatatgcgttatattaattaaaatttgg 198  Q
    ||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30063257 ataattagtgataataaaaggtcaattttgattattgaagaagactagattcgatagaaattgactagccttaatatgcgttatattaattaaaatttgg 30063356  T
Q  199 taggtaaaatataagtaata 218  Q
    ||||||| || |||||||||    
T  30063357 taggtaacatgtaagtaata 30063376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 30228955 - 30229039
Alignment:
Q  1 tctttaagtgttcttcaggcttcacttcgacctttcgccatctcatcttaccctctctgtcttttacctgtgcaaattaattaat 85  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||   |||||||||||||||||| |||||||    
T  30228955 tctttaagtgttcttcaggcttcacttcaaccttttgccatctcatcttaccctctacatcttttacctgtgcaaatcaattaat 30229039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 20610763 - 20610837
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| ||||| ||| |||||||||||||||| ||| |||| |||||||| || |||||||||||||    
T  20610763 acatgcattgttatatgcaggggccggggttcgaactccggacatcccacttattcaccttaaaaaaggtgaatt 20610837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 346
Target Start/End: Complemental strand, 4419779 - 4419678
Alignment:
Q  246 gagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaacacc-caattattcactttgaaaaaggtgaatttta 344  Q
    ||||||||||||| || || | ||||||||||||| ||||| ||| |||||||| ||| | ||||||| || |||||||| |||||||| ||||||| ||    
T  4419779 gagcataactcagttgtcagagacatgcattgttatatgcaggggccggggttcaaacccagaacacctcatttattcaccttgaaaaaagtgaattcta 4419680  T
Q  345 ac 346  Q
    ||    
T  4419679 ac 4419678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 333
Target Start/End: Complemental strand, 56953 - 56865
Alignment:
Q  246 gagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaa 333  Q
    ||||||||||||| || ||   ||||||||||||| ||||| ||| ||| |||||||||||||||| |||| |||||||| ||||||||    
T  56953 gagcataactcagttggcagggacatgcattgttatatgcaagggccggagttcgaactccgaacaccccatttattcaccttgaaaaa 56865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 24039911 - 24039982
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacc-caattattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| |||   |||||||||||||||| ||||||||| || |||||||| ||||||||||||||||    
T  24039911 acatgcattgttatatg---gggtcggggttcgaaccccgaacacctcacttattcaccttgaaaaaggtgaatt 24039982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 30220112 - 30220032
Alignment:
Q  1 tctttaagtgttcttcaggcttcacttcgacctttcgccatctcatcttaccctctctgtcttttacctg-tgcaaattaa 80  Q
    |||||| ||| |||||| |||||||||| ||| || |||||||||||||||| ||| ||||| ||||||| ||||||||||    
T  30220112 tctttatgtgctcttcaagcttcacttcaaccctttgccatctcatcttaccatctttgtctcttacctgttgcaaattaa 30220032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 102 - 208
Target Start/End: Original strand, 30229033 - 30229135
Alignment:
Q  102 aattaatga-taataaaatgccaattttgattattgaagaagactagattcgat-gaaattgactagccttaatatgcgttatattaattaaaatttggt 199  Q
    ||||||||| |||||||| | ||||||||||||||||    || || |||| || |||||||||||||||||||  || ||||||||||||||||| |||    
T  30229033 aattaatgaataataaaaggtcaattttgattattga----gattatattcaatagaaattgactagccttaat--gccttatattaattaaaattaggt 30229126  T
Q  200 aggtaaaat 208  Q
    |||||||||    
T  30229127 aggtaaaat 30229135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 341
Target Start/End: Original strand, 54264930 - 54265026
Alignment:
Q  246 gagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaacacc-caattattcactttgaaaaaggtgaatt 341  Q
    ||||||| |||||||| || | ||||||||||||| ||| | ||||| |||||| |||  |||||||| || |||||||| ||||||||| ||||||    
T  54264930 gagcatagctcagctggcagaaacatgcattgttatatgtaggggtcagggttcaaacctcgaacacctcacttattcaccttgaaaaagatgaatt 54265026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 346
Target Start/End: Original strand, 55677148 - 55677208
Alignment:
Q  287 tgggtcggggttcgaactccgaacac-ccaattattcactttgaaaaaggtgaattttaac 346  Q
    ||||||||||||||||||||| |||| ||| ||||||||||||||| | ||||||| ||||    
T  55677148 tgggtcggggttcgaactccggacactccacttattcactttgaaataagtgaattctaac 55677208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 35230364 - 35230289
Alignment:
Q  270 atgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatttta 344  Q
    |||||||| || ||||||||||||||||||||||  || ||| |||| ||||| || |||||| ||||||||||||    
T  35230364 atgcattgctatatgcatgggtcggggttcgaacctcggacaccccacttatttaccttgaaataggtgaatttta 35230289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 12585630 - 12585556
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacc-caattattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| ||| | ||| ||| |||||||| ||||||||| || |||||||  ||||||||||||||||    
T  12585630 acatgcattgttatatgtaagggccggagttcgaaccccgaacacctcacttattcatcttgaaaaaggtgaatt 12585556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 33359841 - 33359915
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaatt 341  Q
    |||| |||||||| ||||| |||||| ||||||||| | | |||||| | |||||||| ||||||||||||||||    
T  33359841 acattcattgttatatgcaagggtcgaggttcgaaccctggacaccccacttattcaccttgaaaaaggtgaatt 33359915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Original strand, 42432032 - 42432078
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaacaccc 314  Q
    ||||||||||||| ||||| || | ||||||||||||||||||||||    
T  42432032 acatgcattgttatatgcagggattggggttcgaactccgaacaccc 42432078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 49039516 - 49039442
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| ||||| ||   ||||||||||| ||| |||||| | |||||||| ||||||||||||||||    
T  49039516 acatgcattgttatatgcagggactggggttcgaaccccggacaccccacttattcaccttgaaaaaggtgaatt 49039442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 346
Target Start/End: Original strand, 49743388 - 49743465
Alignment:
Q  270 atgcattgttaaatgcatgggtcggggttcgaactccgaacacc-caattattcactttgaaaaaggtgaattttaac 346  Q
    ||||||| ||| ||||| ||| |||| ||||||| ||| ||||| || ||||| || |||||||||||||||||||||    
T  49743388 atgcattattatatgcaggggccgggattcgaaccccggacacctcacttatttaccttgaaaaaggtgaattttaac 49743465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 36008301 - 36008345
Alignment:
Q  270 atgcattgttaaatgcatgggtcggggttcgaactccgaacaccc 314  Q
    ||||||||||| ||||| ||| |||||||||||| ||||||||||    
T  36008301 atgcattgttatatgcaggggccggggttcgaaccccgaacaccc 36008345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 56531305 - 56531261
Alignment:
Q  270 atgcattgttaaatgcatgggtcggggttcgaactccgaacaccc 314  Q
    ||||||||||| ||||| ||| |||||||||||||||| ||||||    
T  56531305 atgcattgttatatgcaggggccggggttcgaactccggacaccc 56531261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 4529834 - 4529757
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatttta 344  Q
    ||||||||| ||| ||||| ||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  4529834 acatgcattattatatgcaggggtcggagttcgaactccgaacaccccacttattcactttgaaaaaggtgaatttta 4529757  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 14307765 - 14307691
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| ||||| |||||| ||||||||| ||||||| |||| ||||||||||| ||||| |||||||    
T  14307765 acatgcattgttatatgcaggggtcgaggttcgaaccccgaacaccccacttattcactttaaaaaaagtgaatt 14307691  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 344
Target Start/End: Original strand, 36413784 - 36413861
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaatttta 344  Q
    ||||||||||||| ||||| ||| ||| |||||||| | | |||||| | ||||||||||||||||||||||||||||    
T  36413784 acatgcattgttatatgcaggggccggagttcgaaccctggacaccccacttattcactttgaaaaaggtgaatttta 36413861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 346
Target Start/End: Complemental strand, 37065505 - 37065426
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacc-caattattcactttgaaaaaggtgaattttaac 346  Q
    ||||||||||||| |||||  |||||||||||||||||||| |||| || | |||||| || ||||| ||||||||||||    
T  37065505 acatgcattgttatatgcagtggtcggggttcgaactccgatcacctcactaattcaccttaaaaaatgtgaattttaac 37065426  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 346
Target Start/End: Original strand, 18065279 - 18065357
Alignment:
Q  269 catgcattgttaaatgcatgggtcggggttcgaactccgaacacc-caattattcactttgaaaaaggtgaattttaac 346  Q
    |||||||||||| ||||| |||| | ||||||||| |||||||||  | |||||||| |||||||| ||||||||||||    
T  18065279 catgcattgttatatgcaggggttgaggttcgaaccccgaacaccttacttattcaccttgaaaaatgtgaattttaac 18065357  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 23663995 - 23664067
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||| ||| ||||| |||| ||||||||||||||  ||||||| |||||||| |||||||| |||||||    
T  23663995 acatgcattattatatgca-gggttggggttcgaactccatacacccatttattcaccttgaaaaaagtgaatt 23664067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 44240133 - 44240084
Alignment:
Q  295 ggttcgaactccgaacacccaattattcactttgaaaaaggtgaatttta 344  Q
    |||||||||||||||| |||| ||||||||||| |||||| |||||||||    
T  44240133 ggttcgaactccgaactcccacttattcactttaaaaaagatgaatttta 44240084  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 341
Target Start/End: Complemental strand, 39334974 - 39334878
Alignment:
Q  246 gagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| || ||   ||||||||| ||| || || |||  ||||||||||||||  ||| |||| |||||||||||||||||||||||||    
T  39334974 gagcataactcagttggcagggacatgcattattatatacaggggctggggttcgaactccagacatcccacttattcactttgaaaaaggtgaatt 39334878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 10602029 - 10602104
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactc-cgaaca-cccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| ||||| ||| |||||||||||| | || ||| |||| |||||||||||||||||| ||||||    
T  10602029 acatgcattgttatatgcaggggacggggttcgaacccacggacaccccacttattcactttgaaaaagatgaatt 10602104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 1244593 - 1244667
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaatt 341  Q
    |||| ||||| || ||||| |||| ||||||||||| ||| |||||| | |||||||| ||||||||||||||||    
T  1244593 acatacattgctatatgcaggggtgggggttcgaaccccggacaccccacttattcaccttgaaaaaggtgaatt 1244667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 12206542 - 12206596
Alignment:
Q  288 gggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 341  Q
    |||||||||||||||| ||||||| |||  |||||||| ||||||||||||||||    
T  12206542 gggtcggggttcgaaccccgaacaccccgcttattcaccttgaaaaaggtgaatt 12206596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 25406721 - 25406647
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||| ||| ||  |||||||||||||||||||||| ||| |||| |||||||| ||| ||||||| ||||    
T  25406721 acatgcattattatatatatgggtcggggttcgaactccggacaccccacttattcaccttggaaaaggtcaatt 25406647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 346
Target Start/End: Complemental strand, 26975369 - 26975291
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaattattcactttgaaaaaggtgaattttaac 346  Q
    |||||||||| || |||||  ||  ||||||||||| ||| ||||||| ||||||||||| |||||||| |||| ||||    
T  26975369 acatgcattgctatatgcagaggctggggttcgaaccccggacacccagttattcactttaaaaaaggttaattctaac 26975291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 32256180 - 32256234
Alignment:
Q  288 gggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 341  Q
    |||||||||||||||||||| ||| |||| |||||||| ||||||||| ||||||    
T  32256180 gggtcggggttcgaactccggacatcccacttattcacattgaaaaagttgaatt 32256234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 37123210 - 37123284
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaacaccc-aattattcactttgaaaaaggtgaatt 341  Q
    ||||||||| ||| ||||| |||||| | ||||||||||| |||||| | ||||||||||| |||||| ||||||    
T  37123210 acatgcattattatatgcaggggtcgagattcgaactccggacaccctacttattcactttaaaaaagatgaatt 37123284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 343
Target Start/End: Original strand, 407505 - 407578
Alignment:
Q  270 atgcattgttaaatgcatgggtcggggttcgaactccgaacacccaattattcactttgaaaaaggtgaatttt 343  Q
    ||||||||||| ||||| ||||||| |||||||| ||||   |||| |||||||  |||||||| |||||||||    
T  407505 atgcattgttatatgcaagggtcggagttcgaaccccgacaccccatttattcagcttgaaaaaagtgaatttt 407578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 313
Target Start/End: Original strand, 10767016 - 10767056
Alignment:
Q  273 cattgttaaatgcatgggtcggggttcgaactccgaacacc 313  Q
    |||||||| ||| | ||||||||||||||||||||||||||    
T  10767016 cattgttatatgtaggggtcggggttcgaactccgaacacc 10767056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 11133102 - 11133146
Alignment:
Q  270 atgcattgttaaatgcatgggtcggggttcgaactccgaacaccc 314  Q
    ||||||||||| ||||| |||||||||||||||| ||| ||||||    
T  11133102 atgcattgttatatgcaggggtcggggttcgaaccccggacaccc 11133146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 346
Target Start/End: Original strand, 28951868 - 28951969
Alignment:
Q  246 gagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatttta 344  Q
    ||||||||||||| || || ||||||||||| ||| ||||| ||||| |||||||||| ||||||| |||| |||||||| |||||||| ||||||| ||    
T  28951868 gagcataactcagttggcagatacatgcattattatatgcaggggtcagggttcgaaccccgaacaccccacttattcaccttgaaaaatgtgaattcta 28951967  T
Q  345 ac 346  Q
    ||    
T  28951968 ac 28951969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 341
Target Start/End: Complemental strand, 24160621 - 24160525
Alignment:
Q  246 gagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaacac-ccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| || || | ||||||| ||||| ||||| |||||||||||||||| ||| |||| ||| ||||||||||| |||||| ||||||    
T  24160621 gagcataactcagttggcagagacatgcactgttatatgcaggggtcggggttcgaaccccggacactccacttattcactttcaaaaagttgaatt 24160525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 346
Target Start/End: Complemental strand, 6054296 - 6054217
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacc-caattattcactttgaaaaaggtgaattttaac 346  Q
    ||||| ||||||| |||||  |||||| |||||||||||||||||| || |||||||| |||||||||||||||| ||||    
T  6054296 acatgtattgttagatgcagaggtcggagttcgaactccgaacacctcacttattcaccttgaaaaaggtgaattctaac 6054217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 32080080 - 32080153
Alignment:
Q  269 catgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 341  Q
    |||| ||| ||| ||| |||||||||||||||||| ||||||| |||| |||||||| ||||||||||||||||    
T  32080080 catgaattattatatgtatgggtcggggttcgaaccccgaacaccccacttattcaccttgaaaaaggtgaatt 32080153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 346
Target Start/End: Original strand, 36842188 - 36842265
Alignment:
Q  270 atgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaattttaac 346  Q
    ||||||| |||||| || |||||||||||||||| ||| ||| |||| ||||||||||||||||| ||||||| ||||    
T  36842188 atgcatttttaaattcaggggtcggggttcgaaccccgtacatcccacttattcactttgaaaaaagtgaattctaac 36842265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 42665994 - 42665930
Alignment:
Q  270 atgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaa 333  Q
    ||||||||||||||||| ||||||| |||||||||||| ||| |||| |||||||| ||||||||    
T  42665994 atgcattgttaaatgcaggggtcggagttcgaactccggacaccccacttattcaccttgaaaaa 42665930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 347
Target Start/End: Original strand, 55318041 - 55318121
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaattttaact 347  Q
    ||||| ||||||||||| | |||| ||| ||||||| ||| |||||| | ||||||||||||||||| |||||||||||||    
T  55318041 acatgtattgttaaatgtaggggttgggattcgaaccccggacaccccacttattcactttgaaaaaagtgaattttaact 55318121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 341
Target Start/End: Complemental strand, 794101 - 794006
Alignment:
Q  246 gagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||| ||||||||  | | ||||||||||||| ||||  ||| |||| ||||||| ||| ||||||| |||||| |||||||| |||||||||    
T  794101 gagcatagctcagctgatagagacatgcattgttatatgcgggggccgggattcgaaccccggacacccacttattctctttgaaagaggtgaatt 794006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 346
Target Start/End: Complemental strand, 3461817 - 3461715
Alignment:
Q  246 gagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca--cccaattattcactttgaaaaaggtgaatttt 343  Q
    ||||||||||||| || ||   ||||||||||||| ||| | |||| ||||||||||| |||||||  |||| ||||||| |||||| |||||||||| |    
T  3461817 gagcataactcagttgacagggacatgcattgttatatgtaggggttggggttcgaaccccgaacacccccatttattcattttgaataaggtgaattct 3461718  T
Q  344 aac 346  Q
    |||    
T  3461717 aac 3461715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 346
Target Start/End: Complemental strand, 4045705 - 4045626
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaattttaac 346  Q
    ||||||||||||| ||||| |||||| |||||||||| || ||| |||| |||||||  |||||||||||||||| ||||    
T  4045705 acatgcattgttatatgcaggggtcgaggttcgaacttcggacaccccacttattcatcttgaaaaaggtgaattctaac 4045626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 341
Target Start/End: Complemental strand, 22432978 - 22432908
Alignment:
Q  272 gcattgttaaatgcatgggtcggggttcgaactccgaacac-ccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||| ||||| ||| |||||||| ||| ||| |||| ||| |||||||||||||||||||| ||||    
T  22432978 gcattgttatatgcaggggccggggttcaaaccccggacactccacttattcactttgaaaaaggtaaatt 22432908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 23237386 - 23237460
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||| ||| ||| | ||||||| |||||||||||| ||| ||||  ||||||| ||||||||||||||||    
T  23237386 acatgcattattatatgtaggggtcggagttcgaactccggacatcccacatattcacgttgaaaaaggtgaatt 23237460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 51017814 - 51017887
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| ||||| | ||||| |||||||| ||| |||||| | ||||||||||||||||| |||||||    
T  51017814 acatgcattgttatatgcaggagtcggagttcgaac-ccggacaccccacttattcactttgaaaaaagtgaatt 51017887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 31902276 - 31902200
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatttta 344  Q
    ||||||||| ||| ||| | |||||||||||||||||||| ||| |||| |||||||| || |||||||| |||||||    
T  31902276 acatgcatttttatatgtaggggtcggggttcgaactccggacaccccacttattcacctt-aaaaaggtaaatttta 31902200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 44592024 - 44592097
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| ||||| ||||| | |||| ||  ||||||| | | |||||||| ||||||||||||||||    
T  44592024 acatgcattgttatatgcaggggtcagagttcaaaacccgaacatctacttattcaccttgaaaaaggtgaatt 44592097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 341
Target Start/End: Complemental strand, 21249047 - 21248987
Alignment:
Q  282 atgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaatt 341  Q
    ||||| ||| |||||||||||| | |||||||| | |||||||| ||||||||||||||||    
T  21249047 atgcaggggccggggttcgaaccctgaacaccccacttattcaccttgaaaaaggtgaatt 21248987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 26583125 - 26583181
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacc-caattattca 323  Q
    ||||||||| ||| ||||| ||||||||||||||||| || ||||| ||||||||||    
T  26583125 acatgcattattatatgcaggggtcggggttcgaactacggacacctcaattattca 26583181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 32508863 - 32508819
Alignment:
Q  270 atgcattgttaaatgcatgggtcggggttcgaactccgaacaccc 314  Q
    ||||||| ||| ||||| |||||||||||||||| ||||||||||    
T  32508863 atgcattattatatgcaggggtcggggttcgaaccccgaacaccc 32508819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 42271082 - 42271038
Alignment:
Q  270 atgcattgttaaatgcatgggtcggggttcgaactccgaacaccc 314  Q
    ||||||||||| ||||| ||| |||||||||||||||| ||||||    
T  42271082 atgcattgttatatgcaggggccggggttcgaactccggacaccc 42271038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 28537159 - 28537233
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| ||||||||| |||||||||||| ||| ||| |||| |||||||||||||||| ||||||||    
T  28537159 acatgcattgttatatgcatgggccggggttcgaaccccggacaccccacttattcactttgaaaatggtgaatt 28537233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 27006365 - 27006438
Alignment:
Q  269 catgcattgttaaatgcatgggtcggggttcgaactccgaacac-ccaattattcactttgaaaaaggtgaatt 341  Q
    |||||||||||| ||||  |||||||||||||||||||| |||| ||| |||||||| ||||||||||||||||    
T  27006365 catgcattgttatatgctggggtcggggttcgaactccggacactccacttattcaccttgaaaaaggtgaatt 27006438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 41405159 - 41405082
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaacac-ccaattattcactttgaaaaaggtgaatttta 344  Q
    ||||||||||||| ||||| ||||||||||| ||||  |  |||| ||||||||||||||||||||||||||||||||    
T  41405159 acatgcattgttatatgcaagggtcggggttggaaccgcagacactccaattattcactttgaaaaaggtgaatttta 41405082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 343
Target Start/End: Complemental strand, 32252990 - 32252914
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaatt-attcactttgaaaaaggtgaatttt 343  Q
    ||||||||| ||| ||| | |||||||||||||||| ||  |||||||||| ||||||||||||||| |||||||||    
T  32252990 acatgcattattatatgtaggggtcggggttcgaaccccagacacccaatttattcactttgaaaaatgtgaatttt 32252914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 31556842 - 31556916
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| ||||| ||||||| |||||||| ||| ||| |||| |||||||| ||||||| ||||||||    
T  31556842 acatgcattgttatatgcaggggtcggagttcgaaccccggacaccccacttattcaccttgaaaagggtgaatt 31556916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 38040290 - 38040363
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| ||||| |||||| ||||||||||| ||   |||| |||||||  ||||||||||||||||    
T  38040290 acatgcattgttatatgcaggggtcgaggttcgaactcggacatcccacttattcatcttgaaaaaggtgaatt 38040363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 346
Target Start/End: Complemental strand, 42553233 - 42553133
Alignment:
Q  246 gagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaacac-ccaattattcactttgaaaaaggtgaatttta 344  Q
    ||||||| ||||| || |||  ||||||||||||| ||||| |||||||||||||||| ||| ||||  || |||||||| |||||||| ||||||| ||    
T  42553233 gagcatagctcagttgacaacgacatgcattgttatatgca-gggtcggggttcgaaccccggacactacacttattcaccttgaaaaatgtgaattcta 42553135  T
Q  345 ac 346  Q
    ||    
T  42553134 ac 42553133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 341
Target Start/End: Complemental strand, 42260792 - 42260717
Alignment:
Q  267 tacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 341  Q
    |||||||||||||| ||||| || ||||| ||||||||||| ||| |||| |||||||| || |||||| ||||||    
T  42260792 tacatgcattgttatatgcagggttcgggtttcgaactccggacatcccacttattcacctttaaaaagatgaatt 42260717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 341
Target Start/End: Complemental strand, 31280423 - 31280377
Alignment:
Q  295 ggttcgaactccgaacacccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||| ||||||||||| |||| ||| ||||||||||||||||    
T  31280423 ggttcgaaccccgaacacccacttatccaccttgaaaaaggtgaatt 31280377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 18872547 - 18872591
Alignment:
Q  270 atgcattgttaaatgcatgggtcggggttcgaactccgaacaccc 314  Q
    ||||||| ||| ||||| |||||||||||||||| ||||||||||    
T  18872547 atgcattattatatgcaggggtcggggttcgaaccccgaacaccc 18872591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 9768880 - 9768806
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| ||||| |||||||||||||||| ||| ||| |||| |||||||| ||||||||||||||||    
T  9768880 acatgcattgttatatgcaggggtcggggttcgaaccccggacaccccacttattcaccttgaaaaaggtgaatt 9768806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 341
Target Start/End: Complemental strand, 2903116 - 2903024
Alignment:
Q  250 ataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||| |||||   ||||||||||||| |||||  ||||||||||||||| ||||||| |||| |||||||| |||||||||| |||||    
T  2903116 ataactcagttgccagggacatgcattgttatatgcagaggtcggggttcgaaccccgaacaccccacttattcaccttgaaaaaggagaatt 2903024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 274 - 345
Target Start/End: Original strand, 24889170 - 24889242
Alignment:
Q  274 attgttaaatgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaattttaa 345  Q
    ||||||| || || ||| || |||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  24889170 attgttatatacaagggccgaggttcgaactccgaacaccccacttattcactttgaaaaaggtgaattttaa 24889242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 12553217 - 12553292
Alignment:
Q  268 acatgcattgttaaatgcatgggtcgggg-ttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| ||||| ||| ||||| ||||||| ||| |||||| | |||||||||||||||||||||||||    
T  12553217 acatgcattgttatatgcaggggccgggggttcgaaccccggacaccccacttattcactttgaaaaaggtgaatt 12553292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 346
Target Start/End: Original strand, 18646691 - 18646789
Alignment:
Q  247 agcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaattattcactttgaaaaaggtgaattttaac 346  Q
    |||||||||||| || ||   ||||||||||| | ||||| |||| | |||| |||||||||||||||| |||||  |||||||||||||||||| ||||    
T  18646691 agcataactcagttggcatggacatgcattgtgatatgca-gggttgcggtttgaactccgaacacccacttattttctttgaaaaaggtgaattctaac 18646789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 18003840 - 18003914
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| ||||| ||| |||||||||| | ||||||| |||| |||||||| | ||||||||||||||    
T  18003840 acatgcattgttatatgcaggggccggggttcgagccccgaacaccccacttattcacctggaaaaaggtgaatt 18003914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 41677104 - 41677158
Alignment:
Q  288 gggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 341  Q
    |||||||||||||||||||| ||| |||| |||||||| ||||||||||||||||    
T  41677104 gggtcggggttcgaactccggacaccccacttattcaccttgaaaaaggtgaatt 41677158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 50199547 - 50199473
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| ||||| ||| |||||||||||| ||| ||| |||| |||||||| ||||||||||| ||||    
T  50199547 acatgcattgttatatgcaggggccggggttcgaaccccggacaccccacttattcaccttgaaaaaggtcaatt 50199473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 346
Target Start/End: Original strand, 23750176 - 23750253
Alignment:
Q  270 atgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaattttaac 346  Q
    ||||||||||| || ||||||||||||||| ||| | ||||| |||| |||||||  |||||||||||||||| ||||    
T  23750176 atgcattgttatatacatgggtcggggttcaaaccctgaacaccccacttattcatcttgaaaaaggtgaattctaac 23750253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 341
Target Start/End: Original strand, 33844655 - 33844715
Alignment:
Q  282 atgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaatt 341  Q
    ||||| || ||||||||||||| ||| |||||| | |||||||||||||||||||||||||    
T  33844655 atgcaaggatcggggttcgaaccccggacaccccacttattcactttgaaaaaggtgaatt 33844715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 341
Target Start/End: Complemental strand, 33949323 - 33949263
Alignment:
Q  282 atgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaatt 341  Q
    ||||| || ||||||||||||| ||| |||||| | |||||||||||||||||||||||||    
T  33949323 atgcaaggatcggggttcgaaccccggacaccccacttattcactttgaaaaaggtgaatt 33949263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 42908795 - 42908834
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccg 307  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  42908795 acatgcattgttatatgcaggggtcggggttcgaactccg 42908834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 1721164 - 1721238
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacc-caattattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| ||||| ||| |||| ||||||| ||| ||||| || |||||||| || |||||||||||||    
T  1721164 acatgcattgttatatgcaggggccgggtttcgaaccccggacacctcacttattcaccttaaaaaaggtgaatt 1721238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 3341807 - 3341733
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaatt 341  Q
    ||||||||| ||| ||||| ||| ||||| |||||| ||| |||||| | |||||||| ||||||||||||||||    
T  3341807 acatgcattattatatgcaggggccggggatcgaaccccggacaccccacttattcaccttgaaaaaggtgaatt 3341733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 11238099 - 11238025
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||| ||| ||||| |||||||||||||||  ||| ||| |||| |||||||  ||||||||||||||||    
T  11238099 acatgcattattatatgcaggggtcggggttcgaatcccggacaccccacttattcatcttgaaaaaggtgaatt 11238025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 40454242 - 40454169
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaatt 341  Q
    ||||||||| ||| ||||| ||| |||||||||||||||| |||||||| ||||||||  || ||||||||||||    
T  40454242 acatgcattattatatgcaagggccggggttcgaactccggacacccaacttattcac-ctgcaaaaggtgaatt 40454169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 339
Target Start/End: Complemental strand, 52961175 - 52961081
Alignment:
Q  246 gagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaac-acccaattattcactttgaaaaaggtgaa 339  Q
    ||||||| ||||| || |||  ||||||||||||| ||||| ||| |||||||||||| ||| ||  |||| |||||||| ||| ||||||||||    
T  52961175 gagcatagctcagttggcaaggacatgcattgttatatgcaggggccggggttcgaaccccggacgccccacttattcacgttggaaaaggtgaa 52961081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 346
Target Start/End: Complemental strand, 7015758 - 7015678
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaa--ttattcactttgaaaaaggtgaattttaac 346  Q
    ||||||||||||| ||| | |||  | |||||||||||||||||||| |  | |||||| |||||||| ||||||||||||    
T  7015758 acatgcattgttatatgtaggggctgaggttcgaactccgaacaccccacttaattcaccttgaaaaatgtgaattttaac 7015678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 341
Target Start/End: Original strand, 41182803 - 41182871
Alignment:
Q  273 cattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 341  Q
    |||||||| ||||| ||||||||||| |||| ||| ||| |||| |||||||||||| ||||||||||||    
T  41182803 cattgttatatgcaggggtcggggtttgaaccccggacaccccacttattcactttg-aaaaggtgaatt 41182871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 11405482 - 11405526
Alignment:
Q  270 atgcattgttaaatgcatgggtcggggttcgaactccgaacaccc 314  Q
    ||||||||||| ||||| |||||||||||||||| ||| ||||||    
T  11405482 atgcattgttatatgcaggggtcggggttcgaaccccggacaccc 11405526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 341
Target Start/End: Original strand, 31965538 - 31965610
Alignment:
Q  270 atgcattgttaaatgcatgggtcggggttcgaactccgaacacc-caattattcactttgaaaaaggtgaatt 341  Q
    ||||||| ||| ||||| || ||||||||||||||||||||||| || |||||||| ||  |||| |||||||    
T  31965538 atgcattattatatgcagggatcggggttcgaactccgaacacctcacttattcaccttttaaaaagtgaatt 31965610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 44409225 - 44409303
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaattttaac 346  Q
    ||||||||| ||| ||||| |||||||||||||||| ||||||| |||| |||||||| |||||||||||||||| ||||    
T  44409225 acatgcattattatatgcaagggtcggggttcgaac-ccgaacaccccacttattcaccttgaaaaaggtgaattctaac 44409303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 10020540 - 10020466
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaac-acccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| ||||| |||| ||||||||||| |||||| ||||| |||||||  ||||||||||||||||    
T  10020540 acatgcattgttatatgcaggggttggggttcgaaccccgaacaacccacttattcatcttgaaaaaggtgaatt 10020466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 338
Target Start/End: Original strand, 35195867 - 35195938
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtga 338  Q
    ||||||||| ||| ||||| ||| |||||||||||| ||||||| |||| |||||||| |||||||||||||    
T  35195867 acatgcattattatatgcaggggccggggttcgaaccccgaacaccccatttattcaccttgaaaaaggtga 35195938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 7162737 - 7162659
Alignment:
Q  270 atgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaattttaact 347  Q
    ||||||||||| ||||| |||||||||||||||||| ||| |  ||| |||||||  |||||||||||||||| |||||    
T  7162737 atgcattgttatatgcaggggtcggggttcgaactctgaatattccacttattcatcttgaaaaaggtgaattctaact 7162659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 327
Target Start/End: Complemental strand, 24304352 - 24304294
Alignment:
Q  270 atgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcacttt 327  Q
    ||||||| ||| ||||| |||||||||||||||||||||||| |||| |||||||||||    
T  24304352 atgcattattatatgcaggggtcggggttcgaactccgaacaccccatttattcacttt 24304294  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 39524713 - 39524785
Alignment:
Q  269 catgcattgttaaatgcatgggtcggggttcgaactccgaacacc-caattattcactttgaaaaaggtgaatt 341  Q
    |||||||||||| ||||| |||| | |||||||| |||||||||| || ||||| |||||||||||||||||||    
T  39524713 catgcattgttatatgcaggggttgaggttcgaa-tccgaacacctcatttatttactttgaaaaaggtgaatt 39524785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 3246533 - 3246481
Alignment:
Q  295 ggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaattttaac 346  Q
    |||||||||||||||||||| | ||||| ||||||||||||||||||| ||||    
T  3246533 ggttcgaactccgaacaccctacttatttactttgaaaaaggtgaattctaac 3246481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 11808062 - 11808142
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattca-ctttgaaaaaggtgaattttaac 346  Q
    ||||||||||||| ||||| |||||||||||||||| ||| ||| |||| ||||||| ||| |||||| ||||||| ||||    
T  11808062 acatgcattgttatatgcaggggtcggggttcgaaccccggacaccccacttattcaccttagaaaaacgtgaattctaac 11808142  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 314
Target Start/End: Original strand, 43635590 - 43635658
Alignment:
Q  246 gagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaacaccc 314  Q
    ||||||||||||| || || | ||||||||||||| |||||  ||||||||||||||| ||| ||||||    
T  43635590 gagcataactcagttggcagaaacatgcattgttatatgcagcggtcggggttcgaaccccggacaccc 43635658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 16814721 - 16814800
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaacac-ccaattattcactttgaaaaaggtgaattttaac 346  Q
    ||||||||| ||| ||| | |||||||||||||||| ||  |||| ||| ||||||||||||||||| ||||||| ||||    
T  16814721 acatgcattattatatgtaggggtcggggttcgaaccccagacactccacttattcactttgaaaaatgtgaattctaac 16814800  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 336
Target Start/End: Original strand, 24427367 - 24427456
Alignment:
Q  248 gcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggt 336  Q
    ||||||||||| || || | ||||||||||||| ||||| |||||  ||||||||| ||||| | |||| |||||||| |||||| ||||    
T  24427367 gcataactcagttggcagagacatgcattgttatatgcaggggtcaaggttcgaaccccgaataccccatttattcaccttgaaataggt 24427456  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 341
Target Start/End: Original strand, 23799306 - 23799398
Alignment:
Q  250 ataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||| || || | ||||||||||||| ||||| |||||||| |||||||  || ||| |||| |||||| |||| |||||||| ||||    
T  23799306 ataactcagttggcagagacatgcattgttatatgcaggggtcgggattcgaacctcggacaccccacttattctctttaaaaaaggttaatt 23799398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 341
Target Start/End: Complemental strand, 14949113 - 14949016
Alignment:
Q  246 gagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca--cccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| || || | |||| |||| ||| |||||  ||||||||||||||||||| |||  |||| |||||||| ||||||||||||||||    
T  14949113 gagcataactcagttggcagaaacatacattattatatgcagaggtcggggttcgaactccggacacccccatttattcaccttgaaaaaggtgaatt 14949016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 7374121 - 7374075
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaacaccc 314  Q
    ||||||||||||| ||| ||||||||| |||||||||||||||||||    
T  7374121 acatgcattgttatatgtatgggtcggagttcgaactccgaacaccc 7374075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 30833041 - 30833115
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| ||||| |||||||||||||||| ||| ||| |||| |||||| | |||||||||| |||||    
T  30833041 acatgcattgttatatgcaggggtcggggttcgaaccccggacaccccacttattctccttgaaaaaggagaatt 30833115  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 34524899 - 34524973
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| ||||| ||| |||||||||| | ||||||| |||| |||||||| | ||||||||||||||    
T  34524899 acatgcattgttatatgcaggggccggggttcgagccccgaacaccccacttattcacctggaaaaaggtgaatt 34524973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 1488112 - 1488186
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| |||||  ||||||||||||||| || |||| |||| |||||||| || |||| ||||||||    
T  1488112 acatgcattgttatatgcagaggtcggggttcgaaccccaaacaccccatttattcaccttaaaaatggtgaatt 1488186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 19680319 - 19680245
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| ||||| | | |||||||||||| ||| ||| |||| |||||| | ||||||||||||||||    
T  19680319 acatgcattgttatatgcaggagccggggttcgaaccccggacaccccacttattctccttgaaaaaggtgaatt 19680245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 14339820 - 14339775
Alignment:
Q  246 gagcataactcagctgccaaatacatgcattgttaaatgcatgggt 291  Q
    |||||||||||||||| || ||||||||||||||| ||||| ||||    
T  14339820 gagcataactcagctgtcagatacatgcattgttatatgcaggggt 14339775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 341
Target Start/End: Complemental strand, 30668277 - 30668181
Alignment:
Q  246 gagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| || || | ||||||||| ||| ||||| ||||| | ||||||||  |||||| |||| |||||||| || ||||| |||||||    
T  30668277 gagcataactcagttggcatagacatgcattattatatgcaggggtcagagttcgaaccacgaacaccccacttattcaccttaaaaaatgtgaatt 30668181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 574257 - 574313
Alignment:
Q  276 tgttaaatgcatgggtcggggttcgaactccgaacacccaattattcactttgaaaa 332  Q
    ||||| ||||| |||||||||||||||| ||| ||||||| |||||||| |||||||    
T  574257 tgttatatgcaggggtcggggttcgaaccccggacacccacttattcaccttgaaaa 574313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 341
Target Start/End: Original strand, 7345430 - 7345526
Alignment:
Q  246 gagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| || ||   ||||||||| ||| ||||| |||||||| ||| |||||| |||| |||| |||||||| || |||||||||||||    
T  7345430 gagcataactcagttggcagggacatgcattattatatgcaggggtcgggcttccaactccaaacaccccacttattcaccttaaaaaaggtgaatt 7345526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 341
Target Start/End: Complemental strand, 25470939 - 25470843
Alignment:
Q  246 gagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| || ||   ||||||||| ||| || |||||||||||||||||||  || ||| |||| |||||||| ||||| ||||||||||    
T  25470939 gagcataactcagttgacaggaacatgcattattatattcatgggtcggggttcgaacctcggacaccccatttattcaccttgaagaaggtgaatt 25470843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 22847333 - 22847259
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacc-caattattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| ||||| |||||| ||||||||| ||  ||||| || |||||||| || |||||||||||||    
T  22847333 acatgcattgttatatgcaggggtcgaggttcgaaccccacacacctcacttattcaccttaaaaaaggtgaatt 22847259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 327
Target Start/End: Complemental strand, 35301232 - 35301174
Alignment:
Q  270 atgcattgttaaatgcatgggtcggggttcgaactccgaacaccc-aattattcacttt 327  Q
    ||||||| ||| ||||| |||||||||||||||||||| |||||| | |||||||||||    
T  35301232 atgcattattatatgcaggggtcggggttcgaactccggacaccctacttattcacttt 35301174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Complemental strand, 33570498 - 33570465
Alignment:
Q  270 atgcattgttaaatgcatgggtcggggttcgaac 303  Q
    ||||||||||| ||||||||||||||||||||||    
T  33570498 atgcattgttatatgcatgggtcggggttcgaac 33570465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 13106439 - 13106391
Alignment:
Q  270 atgcattgttaaatgcatgggtcggggttcgaactccgaacacccaatt 318  Q
    ||||||||||| ||||||||||||| |||| ||| ||| ||||||||||    
T  13106439 atgcattgttatatgcatgggtcggtgttcaaaccccggacacccaatt 13106391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 43468774 - 43468730
Alignment:
Q  270 atgcattgttaaatgcatgggtcggggttcgaactccgaacaccc 314  Q
    ||||||||||| ||| | |||||||||||||||||||| ||||||    
T  43468774 atgcattgttatatgtaggggtcggggttcgaactccggacaccc 43468730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 34104 - 34030
Alignment:
Q  268 acatgcattgttaaatgcatgggtcggggttcgaactccgaacac-ccaattattcactttgaaaaaggtgaatt 341  Q
    ||||||||||||| ||||| ||| ||||||||||| |||| |||| ||| |||||| |||| ||||||| |||||    
T  34104 acatgcattgttatatgcaggggccggggttcgaattccggacactccacttattctctttaaaaaaggagaatt 34030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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