View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4919_low_9 (Length: 342)
Name: NF4919_low_9
Description: NF4919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4919_low_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 33958457 - 33958366
Alignment:
| Q |
10 |
attattcttggaagatttgttttccacatatatgacattagtaaagctaccttcatgtattttaccacaaaacatattta-ctttattgatatgatt |
105 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33958457 |
attattcttggaagatttggtttccacatatatgat-----taaagctaccttcatgtattttaccacaaaacatatttacctttattgatatgatt |
33958366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 33958342 - 33958269
Alignment:
| Q |
188 |
cactcttatctccttcccattcttcatgccatagaacctccaatcctcaagctctctccgactctaacgttttc |
261 |
Q |
| |
|
|||| |||||||| |||||||| |||||||||| ||||||||||||||||| ||||||||||||| | |||||| |
|
|
| T |
33958342 |
cactattatctccctcccattcctcatgccataaaacctccaatcctcaagttctctccgactcttaagttttc |
33958269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 33960472 - 33960380
Alignment:
| Q |
10 |
attattcttggaagatttgttttccacatatatgacattagtaaagctaccttcatgtattttaccacaaaacatattta-ctttattgatatgattc |
106 |
Q |
| |
|
||||||||||||||||| |||||||| || ||| |||||||||||||||||||||| ||||||| |||| ||||||| |||| |||||||||||| |
|
|
| T |
33960472 |
attattcttggaagattcgttttcca----taggaccttagtaaagctaccttcatgta-tttaccataaaatatatttacctttcttgatatgattc |
33960380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 316
Target Start/End: Complemental strand, 33959708 - 33959665
Alignment:
| Q |
273 |
ttcttccaatatttcttcctgatcccacaaaaacctacacatac |
316 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33959708 |
ttcttcaaatatttcttcctgatcccacaaaaaccggcacatac |
33959665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University