View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4920-Insertion-12 (Length: 405)
Name: NF4920-Insertion-12
Description: NF4920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4920-Insertion-12 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold1019 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 259 - 405
Target Start/End: Complemental strand, 32490007 - 32489861
Alignment:
| Q |
259 |
atgatactttctacaattggattgatgttattcttaaatcagcatttctctctatttatgtgaatgagaaagctcaaggatatttccaatgcactagagg |
358 |
Q |
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| T |
32490007 |
atgatactctctacaattggattgatgttattcttaaatcagcatttctctctatttatgtgaatgagaaagctcaaggatatttccaatgcactaaagg |
32489908 |
T |
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| Q |
359 |
tgtaaggtttaataataagataatctcttggaagtcagccatttcta |
405 |
Q |
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| T |
32489907 |
tgtaaggttcaataataagataatctcttggaagtcagccatttcta |
32489861 |
T |
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Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 32490104 - 32490008
Alignment:
| Q |
134 |
ttcatgatataatcattagagactatttgtgcattgcatctgaagctgttaatctcttgcacaacaaagtctttgacacactagagtgaccattttt |
230 |
Q |
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| T |
32490104 |
ttcatgatataatcattagagactatttgtgcattgcatctgaagctgttaatctcttgcacaacaaagtctttgacacactagagtgaccattttt |
32490008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1019 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1019
Description:
Target: scaffold1019; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 314
Target Start/End: Complemental strand, 767 - 702
Alignment:
| Q |
249 |
tttggtttgaatgatactttctacaattggattgatgttattcttaaatcagcatttctctctatt |
314 |
Q |
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| T |
767 |
tttggtttcaatgatgttttctgtaattggattgatgtgattctaaagtcagcctttctctctatt |
702 |
T |
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