View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4920-Insertion-2 (Length: 900)

Name: NF4920-Insertion-2
Description: NF4920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4920-Insertion-2
NF4920-Insertion-2
[»] chr8 (1 HSPs)
chr8 (125-660)||(10470124-10470640)
[»] chr2 (1 HSPs)
chr2 (664-877)||(16466308-16466520)
[»] chr4 (2 HSPs)
chr4 (662-876)||(26426757-26426968)
chr4 (719-842)||(46830744-46830867)
[»] chr5 (3 HSPs)
chr5 (719-876)||(42145625-42145781)
chr5 (719-876)||(40791708-40791864)
chr5 (499-648)||(42721366-42721507)
[»] scaffold0237 (1 HSPs)
scaffold0237 (719-842)||(25510-25633)
[»] chr6 (1 HSPs)
chr6 (719-842)||(29885959-29886082)
[»] chr1 (2 HSPs)
chr1 (719-842)||(31933031-31933154)
chr1 (719-842)||(42850917-42851040)
[»] chr3 (1 HSPs)
chr3 (719-839)||(3347490-3347610)


Alignment Details
Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 125 - 660
Target Start/End: Original strand, 10470124 - 10470640
Alignment:
Q  125 gctatgcgttctttattctgctgcgtattacggaccacgttacctattgagcaaggagcagcatttcaactctcgagtacttgagagatcatgatgtttc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10470124 gctatgcgttctttattctgctgcgtattacggaccacgttacctattgagcaaggagcagcatttcaactctcgagtacttgagagatcatgatgtttc 10470223  T
Q  225 ttttctggaactttatgttctttcactattggattggtctgtggtttgctgatgtagctttgatgtgtcttagagtggagtcgatggtagcataaaggtt 324  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10470224 ttttcaggaactttatgttctttcactgttggattggtctgtggtttgctgatgtagctttgatgtgtcttagagtggagtcgatggtagcataaaggtt 10470323  T
Q  325 aagttgaaatctacaaaattatgcagtatatgacgctatacattaatgaggggaagctgaatttgtcatggaagctagtagtgatattcacaatgtatgg 424  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||                   |||||||||||||||||||||||||||    
T  10470324 aagttgaaatctacaaaattatgcagtatatgatgttatacattaatgagggga-------------------gctagtagtgatattcacaatgtatgg 10470404  T
Q  425 caaggagctgcagattttcttctgcagaattttgcagtaaatgggctggttgtaggtgctttgaggtaatgccatgttgtgggttgggagtgattttctt 524  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10470405 caaggagctgcagattttcttctgcagaattttgcagtaaatgggctggttgtaggtgctttgaggtaatgccatgttgtgggttgggagtgattttctg 10470504  T
Q  525 ctgaacaataaatttttagtcttgttataggtgctgtctaaaactaggaagctttgttttggcatgcttaagtgttcaaggatgatgttggagcttagga 624  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10470505 ctgaacaataaagttttagtcttgttataggtgctgtctaaaactaggaagctttgttttggcatgcttaagtgttcaaggatgatgttggagcttagga 10470604  T
Q  625 agctttgtgtattagaggtttagattgcttttggtg 660  Q
    ||||||||||||||||||||||||||| ||||||||    
T  10470605 agctttgtgtattagaggtttagattgtttttggtg 10470640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 190; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 664 - 877
Target Start/End: Original strand, 16466308 - 16466520
Alignment:
Q  664 tagtgcctgtttggtttagctttttgtaaccctcaaaagcacgtttccagcactccaccgtggtttctttattttgcatcatgttttgtttctttttcta 763  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16466308 tagtgcctgtttggtttacctttttgta-ccctcaaaagcacgtttcctgcactccaccgtagtttctttattttgcatcatgttttgtttctttttcta 16466406  T
Q  764 aaattgattctatcatccaaaatcaattctatgagaagctacgaatccaagcttctacggtgaggctagaatcaattcttccattgtatttaactgacgg 863  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  16466407 aaattgattctatcatccaaaatcaattctatgagaagctacgaatccaagcttctacggtgaggctagaatcaattcttccattgtatttaactgacag 16466506  T
Q  864 ttagataactcacc 877  Q
    ||||||||||||||    
T  16466507 ttagataactcacc 16466520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 8e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 662 - 876
Target Start/End: Complemental strand, 26426968 - 26426757
Alignment:
Q  662 tgtagtgcctgtttggtttagctttttgtaaccctcaaaagcacgtttccagcactccaccgtggtttctttattttgcatcatgttttgtttctttttc 761  Q
    ||||||||||||||||| | ||||||| || || ||||| || |||||  ||  || |||||||||||||||||||| |||||||||| ||||  |||||    
T  26426968 tgtagtgcctgtttggtatggctttttttagcc-tcaaacgc-cgtttggagaccttcaccgtggtttctttattttccatcatgtttggttttcttttc 26426871  T
Q  762 taaaattgattctatcatccaaaatcaattctatgagaagctacgaatccaagcttctacggtgaggctagaatcaattcttccattgtatttaactgac 861  Q
    ||||| ||||| | || ||||||||||||||||||||||||||| ||||  ||||||| ||||| |||||||||||||||||| ||| ||||||||||||    
T  26426870 taaaagtgattttgtcttccaaaatcaattctatgagaagctacaaatctcagcttctgcggtg-ggctagaatcaattcttctattatatttaactgac 26426772  T
Q  862 ggttagataactcac 876  Q
      ||| |||||||||    
T  26426771 atttatataactcac 26426757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 719 - 842
Target Start/End: Complemental strand, 46830867 - 46830744
Alignment:
Q  719 caccgtggtttctttattttgcatcatgttttgtttctttttctaaaattgattctatcatccaaaatcaattctatgagaagctacgaatccaagcttc 818  Q
    ||||||||||| || | |||||| ||||||| ||| | ||||| | |||  |||| | | ||||||||||||||||  | ||||||| ||||  ||||||    
T  46830867 caccgtggttttttcactttgcagcatgtttggttaccttttccagaatcaattcaaccttccaaaatcaattctacaaaaagctacaaatctcagcttc 46830768  T
Q  819 tacggtgaggctagaatcaattct 842  Q
    ||||||||||||  ||||||||||    
T  46830767 tacggtgaggcttaaatcaattct 46830744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 2e-33; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 719 - 876
Target Start/End: Original strand, 42145625 - 42145781
Alignment:
Q  719 caccgtggtttctttattttgcatcatgttttgtttctttttctaaaattgattctatcatccaaaatcaattctatgagaagctacgaatccaagcttc 818  Q
    |||||||||||||||||||| |||||||||| ||||  |||||||||| ||||| | || | ||||||||||| ||||||||||||| ||||  ||||||    
T  42145625 caccgtggtttctttattttccatcatgtttggttttcttttctaaaagtgattttgtctttcaaaatcaattttatgagaagctacaaatctcagcttc 42145724  T
Q  819 tacggtgaggctagaatcaattcttccattgtatttaactgacggttagataactcac 876  Q
    | ||||| |||||||||||||||||| ||| ||||||||||||  ||| |||||||||    
T  42145725 tgcggtg-ggctagaatcaattcttctattatatttaactgacatttatataactcac 42145781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 719 - 876
Target Start/End: Complemental strand, 40791864 - 40791708
Alignment:
Q  719 caccgtggtttctttattttgcatcatgttttgtttctttttctaaaattgattctatcatccaaaatcaattctatgagaagctacgaatccaagcttc 818  Q
    |||||||||||||||||||| |||||||||| ||||  |||||||||| ||||| | || | ||||||||||| ||||||||||||| ||||  ||||||    
T  40791864 caccgtggtttctttattttccatcatgtttggttttcttttctaaaagtgattttgtctttcaaaatcaattttatgagaagctacaaatctcagcttc 40791765  T
Q  819 tacggtgaggctagaatcaattcttccattgtatttaactgacggttagataactcac 876  Q
    | | ||| |||||||||||||||||| ||| ||||||||||||  ||| |||||||||    
T  40791764 tgcagtg-ggctagaatcaattcttctattatatttaactgacatttatataactcac 40791708  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 499 - 648
Target Start/End: Original strand, 42721366 - 42721507
Alignment:
Q  499 tgttgtgggttgggagtgattttcttctgaacaataaatttttagtcttgttataggtgctgtctaaaactaggaagctttgttttggcatgcttaagtg 598  Q
    |||||||||| ||||||||| || |  || ||||| |||||||| | |||||||||| |||||  ||||||||||| ||||||||| |||        ||    
T  42721366 tgttgtgggtcgggagtgatcttgtattgtacaatcaatttttaattttgttataggggctgtaaaaaactaggaaactttgttttagca--------tg 42721457  T
Q  599 ttcaaggatgatgttggagcttaggaagctttgtgtattagaggtttaga 648  Q
    | || ||||||||||||| |||||||||| ||||||||| | ||||||||    
T  42721458 tgcagggatgatgttggaccttaggaagccttgtgtatttgtggtttaga 42721507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 719 - 842
Target Start/End: Original strand, 25510 - 25633
Alignment:
Q  719 caccgtggtttctttattttgcatcatgttttgtttctttttctaaaattgattctatcatccaaaatcaattctatgagaagctacgaatccaagcttc 818  Q
    ||||||||||| || | |||||| ||||||| ||| | ||||| |||||  |||| | | ||||||||||||||||  ||||||||| ||||  ||||||    
T  25510 caccgtggttttttcactttgcagcatgtttggttaccttttccaaaatcaattcaaccttccaaaatcaattctacaagaagctacaaatctcagcttc 25609  T
Q  819 tacggtgaggctagaatcaattct 842  Q
    ||||||||||||  ||||||||||    
T  25610 tacggtgaggcttaaatcaattct 25633  T

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Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 719 - 842
Target Start/End: Original strand, 29885959 - 29886082
Alignment:
Q  719 caccgtggtttctttattttgcatcatgttttgtttctttttctaaaattgattctatcatccaaaatcaattctatgagaagctacgaatccaagcttc 818  Q
    ||||||||||| || | |||||| ||||||| ||| | ||||| |||||  |||| | | ||||||||||||||||  ||||||||| ||||  ||||||    
T  29885959 caccgtggttttttcactttgcagcatgtttggttaccttttccaaaatcaattcaaccttccaaaatcaattctacaagaagctacaaatctcagcttc 29886058  T
Q  819 tacggtgaggctagaatcaattct 842  Q
    ||||||||||||  ||||||||||    
T  29886059 tacggtgaggcttaaatcaattct 29886082  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 719 - 842
Target Start/End: Original strand, 31933031 - 31933154
Alignment:
Q  719 caccgtggtttctttattttgcatcatgttttgtttctttttctaaaattgattctatcatccaaaatcaattctatgagaagctacgaatccaagcttc 818  Q
    ||||||||||| || | |||||| ||||||| ||| | ||||| | |||  |||| | | ||||||||||||||||  ||||||||| ||||  ||||||    
T  31933031 caccgtggttttttcactttgcagcatgtttggttaccttttccagaatcaattcaaccttccaaaatcaattctacaagaagctacaaatctcagcttc 31933130  T
Q  819 tacggtgaggctagaatcaattct 842  Q
    ||||||||||||  ||||||||||    
T  31933131 tacggtgaggcttaaatcaattct 31933154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 719 - 842
Target Start/End: Complemental strand, 42851040 - 42850917
Alignment:
Q  719 caccgtggtttctttattttgcatcatgttttgtttctttttctaaaattgattctatcatccaaaatcaattctatgagaagctacgaatccaagcttc 818  Q
    ||||||||||| || | |||||| ||||||| ||| | ||||| | |||  |||| | | ||||||||||||||||  ||||||||| ||||  ||||||    
T  42851040 caccgtggttttttcactttgcagcatgtttggttaccttttccagaatcaattcaaccttccaaaatcaattctacaagaagctacaaatctcagcttc 42850941  T
Q  819 tacggtgaggctagaatcaattct 842  Q
    ||||||||||||  ||||||||||    
T  42850940 tacggtgaggcttaaatcaattct 42850917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 719 - 839
Target Start/End: Original strand, 3347490 - 3347610
Alignment:
Q  719 caccgtggtttctttattttgcatcatgttttgtttctttttctaaaattgattctatcatccaaaatcaattctatgagaagctacgaatccaagcttc 818  Q
    ||||||||||| || | |||||| ||||||| ||| | ||||| | |||  |||| | | |||||||| |||||||  ||||||||| ||||  ||||||    
T  3347490 caccgtggttttttcactttgcagcatgtttggttaccttttccagaatcaattcaaccttccaaaattaattctacaagaagctacaaatctcagcttc 3347589  T
Q  819 tacggtgaggctagaatcaat 839  Q
    ||||||||||||  |||||||    
T  3347590 tacggtgaggctcaaatcaat 3347610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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