View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4920-Insertion-4 (Length: 575)
Name: NF4920-Insertion-4
Description: NF4920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4920-Insertion-4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 8 - 575
Target Start/End: Original strand, 45974115 - 45974681
Alignment:
| Q |
8 |
aatgtcacaagttcacaaccaaccacattacatcaccatcacattcacgttttctctgtgtttttcagttaccagtacctccattattattagcactata |
107 |
Q |
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| T |
45974115 |
aatgtcacaagttcacaaccaaccacattacatcaccatcacattcacgttttctctgtgtttttcagttaccagtacctccattattattagcactata |
45974214 |
T |
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| Q |
108 |
gcatatcacatttcctctttatcggaaaaccatatcccgctttaaacatcgcaactacgcgattatacttatcaatctgtcttctaagtttcttaagagt |
207 |
Q |
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| T |
45974215 |
gcatatcacatttcctctttatcggaaaaccatatcccgctttaaacatcgcaactacgcgattatacttatcaatctgtcttctaagtttcttaagagt |
45974314 |
T |
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| Q |
208 |
aaaatacaattcagcttccaactatatattatgcataataattagttcaagtgctgttatttgattgttgcaataagagatttgcatgcgttgagnnnnn |
307 |
Q |
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| T |
45974315 |
aaaatacaattcagcttccaactatatattatgcataataattagttgaagtgctgttatttgattgttgcaataagagatttgcatgcgttgaggaaag |
45974414 |
T |
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| Q |
308 |
nnnnnnnnnnnnnncagcgaagaggacggtgtcggtaacggccaagtttccgtttgtttcttggtttgctacgtggcagcaagaggctcgtgagtgaaaa |
407 |
Q |
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| T |
45974415 |
aagaagaagaacagcaacgaagaggacggtgtcggtaacggccaagtttccgtttgtttcttggtttgctacgtggc-gcaagaggctcgtgagtgaaaa |
45974513 |
T |
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| Q |
408 |
tgccacatagagcaacttactttttcccgcgtcaatttccggagcgaggattggatgaatcatccaaaaagctattagatcaagataaggacaaaatcgt |
507 |
Q |
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| T |
45974514 |
tgccacatagagcaacttactttttcccgcgtcaatttccggagcgaggattggatgaatcatccaaaaagctattagatcaagataaggacaaaatcgt |
45974613 |
T |
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| Q |
508 |
caactccatcaaatctccaatcgaaaacgacactccaaccacaaagtcactttcctcgtctactcctc |
575 |
Q |
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| T |
45974614 |
caactccatcaaatctccaatcgaaaacgacactccaaccacaaagtcactttcctcgtctactcctc |
45974681 |
T |
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