View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4920-Insertion-5 (Length: 212)
Name: NF4920-Insertion-5
Description: NF4920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4920-Insertion-5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 50934999 - 50935203
Alignment:
| Q |
8 |
cattccttactgcctgatatgatttcagcttgaaaatcaatacttcaatagataaatgaaattgaataaataagattaatgtgatcaaaataccttcttc |
107 |
Q |
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| T |
50934999 |
cattccttactgcctgatatgatttcagcttgaaaatcaatacttcaatagataaatgaagttgaataaataagattaatgtgatcaaaataccttcttc |
50935098 |
T |
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| Q |
108 |
aatgagtgaccatacatgtcatgataataagaactgactgcagccaaatgtgcggcactcctttcactgaatatttggacaaaagtcttttcatcagttc |
207 |
Q |
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| T |
50935099 |
aatgagtgaccatacatgtcatgataataagaactgattgcagccaaatgtgcggcactcctttcactgaatatttggacaaaagtcttttcatcagttc |
50935198 |
T |
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| Q |
208 |
cgagt |
212 |
Q |
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||||| |
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| T |
50935199 |
cgagt |
50935203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 8 - 208
Target Start/End: Complemental strand, 26552895 - 26552695
Alignment:
| Q |
8 |
cattccttactgcctgatatgatttcagcttgaaaatcaatacttcaatagataaatgaaattgaataaataagattaatgtgatcaaaataccttcttc |
107 |
Q |
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| T |
26552895 |
cattctttactgcctgatatgaatttaacttgaaattgaatatctcaatagataaatgaagttgaattgataggattaaagtgatcaagttacctttttc |
26552796 |
T |
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| Q |
108 |
aatgagtgaccatacatgtcatgataataagaactgactgcagccaaatgtgcggcactcctttcactgaatatttggacaaaagtcttttcatcagttc |
207 |
Q |
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| T |
26552795 |
aatgagtgaccatacatgtcatgataatatgaactgacggcagccaaatgcgcgctgctcctttcactgaatatttggacaaatgtcttttcatcggttc |
26552696 |
T |
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| Q |
208 |
c |
208 |
Q |
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| T |
26552695 |
c |
26552695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 26564743 - 26564539
Alignment:
| Q |
8 |
cattccttactgcctgatatgatttcagcttgaaaatcaatacttcaatagataaatgaaattgaataaataagattaatgtgatcaaaataccttcttc |
107 |
Q |
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| T |
26564743 |
cattctttactgcctgatatgaagttagcttgaaattgaataccaaaatagataaatgcaattgaaataaaaagatgaaagtaatcacattaccttcttc |
26564644 |
T |
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| Q |
108 |
aatgagtgaccatacatgtcatgataataagaactgactgcagccaaatgtgcggcactcctttcactgaatatttggacaaaagtcttttcatcagttc |
207 |
Q |
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| T |
26564643 |
aatgagtgaccgtacatgtcatgataataagcactgacggcaaccaaatgtgcgccgcttcgttcactgaatatttggataaaagtcttttcatcagttc |
26564544 |
T |
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| Q |
208 |
cgagt |
212 |
Q |
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||||| |
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| T |
26564543 |
cgagt |
26564539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 26558983 - 26558777
Alignment:
| Q |
8 |
cattccttactgcctgatatgatttcagcttgaaaatcaatacttcaatagataaatgaaattgaa--taaataagattaatgtgatcaaaataccttct |
105 |
Q |
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| T |
26558983 |
cattctttactgcctgatataaattcagcatgaaattatataccacaatagatagatgaagttgaagtttgataagatcaatttgatccagttaccttct |
26558884 |
T |
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| Q |
106 |
tcaatgagtgaccatacatgtcatgataataagaactgactgcagccaaatgtgcggcactcctttcactgaatatttggacaaaagtcttttcatcagt |
205 |
Q |
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| T |
26558883 |
tcagtgagtgaccatacatgtcatgataataagaattgacggcagccaaatgcgtgccactccgttcactgaatatttggacaaaagtcttttcatcgga |
26558784 |
T |
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| Q |
206 |
tccgagt |
212 |
Q |
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| T |
26558783 |
tccgagt |
26558777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 45507504 - 45507565
Alignment:
| Q |
147 |
gcagccaaatgtgcggcactcctttcactgaatatttggacaaaagtcttttcatcagttcc |
208 |
Q |
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| T |
45507504 |
gcagccaactgtgcggcactccgttggctgaatatttgcacaaaagttttctcatcagttcc |
45507565 |
T |
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