View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4920-Insertion-7 (Length: 103)

Name: NF4920-Insertion-7
Description: NF4920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4920-Insertion-7
NF4920-Insertion-7
[»] chr3 (1 HSPs)
chr3 (7-103)||(37562587-37562677)
[»] scaffold0368 (2 HSPs)
scaffold0368 (54-82)||(15810-15838)
scaffold0368 (55-82)||(15816-15843)
[»] chr5 (2 HSPs)
chr5 (54-82)||(43380171-43380199)
chr5 (54-82)||(43380177-43380205)
[»] chr1 (2 HSPs)
chr1 (54-82)||(42950137-42950165)
chr1 (55-82)||(42950143-42950170)
[»] chr7 (1 HSPs)
chr7 (54-81)||(46998564-46998591)


Alignment Details
Target: chr3 (Bit Score: 70; Significance: 4e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 4e-32
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 37562587 - 37562677
Alignment:
Q  7 atcttcttccaccacaaacccaatcaacacacaaaccttcttctctccaaattcaaattcaaattcaaattcaaatggcttcttccttgggcgttgg 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||| |||||    
T  37562587 atcttcttccaccacaaacccaatcaacacacaaaccttcttctctccaaa------ttcaaattcaaattcaaatggcttcttccttgggtgttgg 37562677  T

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Target: scaffold0368 (Bit Score: 29; Significance: 0.0000001; HSPs: 2)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 82
Target Start/End: Complemental strand, 15838 - 15810
Alignment:
Q  54 caaattcaaattcaaattcaaattcaaat 82  Q
    |||||||||||||||||||||||||||||    
T  15838 caaattcaaattcaaattcaaattcaaat 15810  T

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Target: scaffold0368; HSP #2
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 82
Target Start/End: Complemental strand, 15843 - 15816
Alignment:
Q  55 aaattcaaattcaaattcaaattcaaat 82  Q
    ||||||||||||||||||||||||||||    
T  15843 aaattcaaattcaaattcaaattcaaat 15816  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 82
Target Start/End: Complemental strand, 43380199 - 43380171
Alignment:
Q  54 caaattcaaattcaaattcaaattcaaat 82  Q
    |||||||||||||||||||||||||||||    
T  43380199 caaattcaaattcaaattcaaattcaaat 43380171  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 82
Target Start/End: Complemental strand, 43380205 - 43380177
Alignment:
Q  54 caaattcaaattcaaattcaaattcaaat 82  Q
    |||||||||||||||||||||||||||||    
T  43380205 caaattcaaattcaaattcaaattcaaat 43380177  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 82
Target Start/End: Complemental strand, 42950165 - 42950137
Alignment:
Q  54 caaattcaaattcaaattcaaattcaaat 82  Q
    |||||||||||||||||||||||||||||    
T  42950165 caaattcaaattcaaattcaaattcaaat 42950137  T

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Target: chr1; HSP #2
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 82
Target Start/End: Complemental strand, 42950170 - 42950143
Alignment:
Q  55 aaattcaaattcaaattcaaattcaaat 82  Q
    ||||||||||||||||||||||||||||    
T  42950170 aaattcaaattcaaattcaaattcaaat 42950143  T

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Target: chr7 (Bit Score: 28; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 81
Target Start/End: Complemental strand, 46998591 - 46998564
Alignment:
Q  54 caaattcaaattcaaattcaaattcaaa 81  Q
    ||||||||||||||||||||||||||||    
T  46998591 caaattcaaattcaaattcaaattcaaa 46998564  T

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